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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| name: docs (build) | ||
|
|
||
| on: | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| paths: | ||
| - .pre-commit-config.yaml | ||
| - .github/workflows/docs_build.yml | ||
| - '**.py' | ||
| - '**.ipynb' | ||
| - poetry.lock | ||
| - pyproject.toml | ||
| - '**.rst' | ||
| - '**.md' | ||
|
|
||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/[email protected] | ||
| - name: Install dependencies, build docs and coverage report | ||
| run: python3 -m pip install --upgrade pip && python3 -m pip install poetry | ||
| - uses: actions/[email protected] | ||
| with: | ||
| python-version: '3.9' | ||
| cache: 'poetry' | ||
| - run: | | ||
| python3 -m pip install --upgrade pip && python3 -m pip install poetry | ||
| poetry env use '3.9' | ||
| source $(poetry env info --path)/bin/activate | ||
| poetry install --with docs,test | ||
| cd docs && rm -rf source/reference/api/_autosummary && make html | ||
| cd .. && coverage run -m pytest -m "not integration_test" && coverage xml && coverage report -m | ||
| - name: Upload coverage to Codecov | ||
| uses: Wandalen/[email protected] | ||
| with: | ||
| action: codecov/[email protected] | ||
| with: | | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| file: ./coverage.xml | ||
| name: codecov-umbrella | ||
| fail_ci_if_error: true | ||
| attempt_limit: 5 | ||
| attempt_delay: 30000 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| name: docs | ||
|
|
||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| paths: | ||
| - .pre-commit-config.yaml | ||
| - .github/workflows/code_checks.yml | ||
| - .github/workflows/docs_build.yml | ||
| - .github/workflows/docs_deploy.yml | ||
| - .github/workflows/integration_tests.yml | ||
| - '**.py' | ||
| - '**.ipynb' | ||
| - poetry.lock | ||
| - pyproject.toml | ||
| - '**.rst' | ||
| - '**.md' | ||
|
|
||
| jobs: | ||
| deploy: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/[email protected] | ||
| with: | ||
| submodules: 'true' | ||
| - name: Install dependencies, build docs and coverage report | ||
| run: python3 -m pip install --upgrade pip && python3 -m pip install poetry | ||
| - uses: actions/[email protected] | ||
| with: | ||
| python-version: '3.9' | ||
| cache: 'poetry' | ||
| - run: | | ||
| python3 -m pip install --upgrade pip && python3 -m pip install poetry | ||
| poetry env use '3.9' | ||
| source $(poetry env info --path)/bin/activate | ||
| poetry install --with docs,test | ||
| cd docs && rm -rf source/reference/api/_autosummary && make html | ||
| cd .. && coverage run -m pytest -m "not integration_test" && coverage xml && coverage report -m | ||
| - name: Upload coverage to Codecov | ||
| uses: Wandalen/[email protected] | ||
| with: | ||
| action: codecov/[email protected] | ||
| with: | | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| file: ./coverage.xml | ||
| name: codecov-umbrella | ||
| fail_ci_if_error: true | ||
| attempt_limit: 5 | ||
| attempt_delay: 30000 | ||
| - name: Deploy to Github pages | ||
| uses: JamesIves/[email protected] | ||
| with: | ||
| branch: github_pages | ||
| folder: docs/build/html |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,61 @@ | ||
| name: integration tests | ||
|
|
||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| paths: | ||
| - .pre-commit-config.yaml | ||
| - .github/workflows/code_checks.yml | ||
| - .github/workflows/docs_build.yml | ||
| - .github/workflows/docs_deploy.yml | ||
| - .github/workflows/integration_tests.yml | ||
| - '**.py' | ||
| - '**.ipynb' | ||
| - poetry.lock | ||
| - pyproject.toml | ||
| - '**.rst' | ||
| - '**.md' | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| paths: | ||
| - .pre-commit-config.yaml | ||
| - .github/workflows/code_checks.yml | ||
| - .github/workflows/docs_build.yml | ||
| - .github/workflows/docs_deploy.yml | ||
| - .github/workflows/integration_tests.yml | ||
| - '**.py' | ||
| - '**.ipynb' | ||
| - poetry.lock | ||
| - pyproject.toml | ||
| - '**.rst' | ||
| - '**.md' | ||
|
|
||
| jobs: | ||
| integration-tests: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/[email protected] | ||
| - name: Install poetry | ||
| run: python3 -m pip install --upgrade pip && python3 -m pip install poetry | ||
| - uses: actions/[email protected] | ||
| with: | ||
| python-version: '3.9' | ||
| - name: Install dependencies and check code | ||
| run: | | ||
| poetry env use '3.9' | ||
| source $(poetry env info --path)/bin/activate | ||
| poetry install --with docs,test | ||
| coverage run -m pytest -m integration_test && coverage xml && coverage report -m | ||
| - name: Upload coverage to Codecov | ||
| uses: Wandalen/[email protected] | ||
| with: | ||
| action: codecov/[email protected] | ||
| with: | | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| file: ./coverage.xml | ||
| name: codecov-umbrella | ||
| fail_ci_if_error: true | ||
| attempt_limit: 5 | ||
| attempt_delay: 30000 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| name: publish package | ||
|
|
||
| on: | ||
| release: | ||
| types: [published] | ||
|
|
||
| jobs: | ||
| deploy: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Install apt dependencies | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install libcurl4-openssl-dev libssl-dev | ||
| - uses: actions/[email protected] | ||
| - name: Install poetry | ||
| run: python3 -m pip install --upgrade pip && python3 -m pip install poetry | ||
| - uses: actions/[email protected] | ||
| with: | ||
| python-version: '3.9' | ||
| - name: Build package | ||
| run: poetry build | ||
| - name: Publish package | ||
| uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29 | ||
| with: | ||
| user: __token__ | ||
| password: ${{ secrets.PYPI_API_TOKEN }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,43 +1,45 @@ | ||
| # only has to pass for python 3.9 | ||
| name: Static code checks | ||
| name: code checks | ||
|
|
||
| on: | ||
| push: | ||
| branches: | ||
| main | ||
| - main | ||
| paths: | ||
| - .pre-commit-config.yaml | ||
| - .github/workflows/code_checks.yml | ||
| - '**.py' | ||
| - poetry.lock | ||
| - pyproject.toml | ||
| - '**.ipynb' | ||
| pull_request: | ||
| branches: | ||
| main | ||
| - main | ||
| paths: | ||
| - .pre-commit-config.yaml | ||
| - .github/workflows/code_checks.yml | ||
| - '**.py' | ||
| - poetry.lock | ||
| - pyproject.toml | ||
| - '**.ipynb' | ||
|
|
||
| jobs: | ||
| run-code-check: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v3 | ||
| - name: Set up Python 3.9 | ||
| uses: actions/setup-python@v3 | ||
| - uses: actions/[email protected] | ||
| - name: Install poetry | ||
| run: python3 -m pip install --upgrade pip && python3 -m pip install poetry | ||
| - uses: actions/setup-python@v5.0.0 | ||
| with: | ||
| python-version: 3.9 | ||
| - name: Install and configure Poetry | ||
| uses: snok/install-poetry@v1 | ||
| with: | ||
| virtualenvs-create: true | ||
| virtualenvs-in-project: true | ||
| - name: Set up cache | ||
| uses: actions/cache@v2 | ||
| id: cached-poetry-dependencies | ||
| with: | ||
| path: .venv | ||
| key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }} | ||
| - name: Install dependencies | ||
| run: poetry install --with "dev, test" | ||
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | ||
| - name: Pre-commit Checks | ||
| python-version: '3.9' | ||
| cache: 'poetry' | ||
| - name: Install dependencies and check code | ||
| run: | | ||
| source .venv/bin/activate | ||
| poetry env use '3.9' | ||
| source $(poetry env info --path)/bin/activate | ||
| poetry install --with test --all-extras | ||
| pre-commit run --all-files | ||
| - name: pip-audit (gh-action-pip-audit) | ||
| uses: pypa/[email protected] | ||
| with: | ||
| virtual-environment: .venv/ | ||
| virtual-environment: $(poetry env info --path)/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,45 +1,48 @@ | ||
| repos: | ||
| - repo: https://github.com/pre-commit/pre-commit-hooks | ||
| rev: v4.5.0 # Use the ref you want to point at | ||
| rev: v4.4.0 # Use the ref you want to point at | ||
| hooks: | ||
| - id: trailing-whitespace | ||
| - id: check-ast | ||
| - id: check-builtin-literals | ||
| - id: check-docstring-first | ||
| - id: check-executables-have-shebangs | ||
| - id: debug-statements | ||
| - id: end-of-file-fixer | ||
| - id: mixed-line-ending | ||
| args: [--fix=lf] | ||
| - id: requirements-txt-fixer | ||
| - id: trailing-whitespace | ||
| - id: check-yaml | ||
| - id: trailing-whitespace | ||
| - id: check-ast | ||
| - id: check-builtin-literals | ||
| - id: check-docstring-first | ||
| - id: check-executables-have-shebangs | ||
| - id: debug-statements | ||
| - id: end-of-file-fixer | ||
| - id: mixed-line-ending | ||
| args: [--fix=lf] | ||
| - id: requirements-txt-fixer | ||
| - id: check-yaml | ||
| - id: check-toml | ||
|
|
||
| - repo: https://github.com/PyCQA/flake8 | ||
| rev: 7.0.0 | ||
| - repo: https://github.com/charliermarsh/ruff-pre-commit | ||
| rev: 'v0.2.2' | ||
| hooks: | ||
| - id: flake8 | ||
|
|
||
| - repo: https://github.com/psf/black | ||
| rev: 24.1.1 | ||
| hooks: | ||
| - id: black | ||
|
|
||
| - repo: https://github.com/PyCQA/isort | ||
| rev: 5.13.2 | ||
| hooks: | ||
| - id: isort | ||
| - id: ruff | ||
| args: [--fix, --exit-non-zero-on-fix] | ||
| types_or: [python, jupyter] | ||
| - id: ruff-format | ||
| types_or: [python, jupyter] | ||
|
|
||
| - repo: https://github.com/pre-commit/mirrors-mypy | ||
| rev: v1.8.0 | ||
| hooks: | ||
| - id: mypy | ||
| - id: mypy | ||
| entry: python3 -m mypy --config-file pyproject.toml | ||
| language: system | ||
| types: [python] | ||
| exclude: "tests" | ||
|
|
||
| - repo: https://github.com/nbQA-dev/nbQA | ||
| rev: 1.7.1 | ||
| hooks: | ||
| - id: nbqa-black | ||
| - id: nbqa-isort | ||
| - id: nbqa-check-ast | ||
| - id: nbqa-flake8 | ||
| - id: nbqa-mypy | ||
| - id: nbqa-ruff | ||
| args: [--fix, --exit-non-zero-on-fix] | ||
|
|
||
| - repo: local | ||
| hooks: | ||
| - id: doctest | ||
| name: doctest | ||
| entry: python3 -m doctest -o NORMALIZE_WHITESPACE | ||
| files: "^aieng_template/" | ||
| language: system |
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