Skip to content

Commit

Permalink
Merge pull request #287 from VectorInstitute/dbe/small_update_to_flam…
Browse files Browse the repository at this point in the history
…by_installs_for_cluster

Small update to FLamby install instructions to avoid cluster failures.
  • Loading branch information
emersodb authored Nov 18, 2024
2 parents 3747589 + d973069 commit a82a764
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions research/flamby/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -17,8 +17,10 @@ cd <fl4health_repository>
pip install --upgrade pip poetry
poetry install --with "dev, dev-local, test, codestyle"
cd <FLamby_repository>
pip install albumentations==1.4.20
pip install -e ".[cam16, heart, isic2019, ixi, lidc, tcga]"
```
__NOTE__: The forced install of albumentations 1.4.20 avoids an issue where versions > 1.4.20 rely on simsimd which does not compile on the Vector cluster
__NOTE__: We avoid installing Fed-KITS2019, as it requires a fairly old version on nnUnet, which we no longer support in our library.

In addition, you'll have to edit the code for `FedIXITiny` in `flamby/datasets/fed_ixi/datasets.py` replacing the following
Expand Down

0 comments on commit a82a764

Please sign in to comment.