Try running the validate_phenotype_model WDL in CI

Also add a file that can be used for input to this workflow.

.github/workflows/ci.yml

@@ -47,6 +47,12 @@ jobs:
       - name: Checkout repository
         uses: actions/checkout@v3
 
+      - name: Checkout primed-file-checks
+        uses: actions/checkout@v3
+        with:
+          repository: UW-GAC/primed-file-checks
+          path: primed-file-checks
+
       # Install Java to this VM. This Java version and distribution is compatible with Cromwell.
       # This is the same step as used by broadinstitute/cromwell/.github/set_up_cromwell_action.
       - name: Setup JDK
@@ -64,7 +70,7 @@ jobs:
 
       - name: Validate test data
         run: |
-          java -jar cromwell-87.jar --help
+          java -jar cromwell-87.jar run primed-file-checks/validate_phenotype_model.wdl --inputs test_data/wdl_inputs_validate_phenotype_model.json
         shell: bash
 
       - name: Success!

test_data/wdl_inputs_validate_phenotype_model.json

@@ -0,0 +1,11 @@
+{
+    "validate_phenotype_model.table_files": {
+        "subject": "test_data/subject.tsv",
+        "phenotype_harmonized": "test_data/phenotype_harmonized.tsv"
+    },
+    "validate_phenotype_model.model_url": "https://raw.githubusercontent.com/UW-GAC/primed-file-checks/main/testdata/data_model_phen.json",
+    "validate_phenotype_model.import_tables": false,
+    "validate_phenotype_model.overwrite": true,
+    "validate_phenotype_model.workspace_name": "PRIMED_pheno_QC_test",
+    "validate_phenotype_model.workspace_namespace": "primed-cc-scratch"
+}