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Update test data to match new cqmt_hematology limits
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For some reason, this also changes the population_descriptor table,
but I'm not sure why.
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@amstilp
amstilp committed May 14, 2024
1 parent 37cb2d5 commit a9bdc3f
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40 changes: 20 additions & 20 deletions test_data/cmqt_hematology.tsv
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subject_id age_at_obs visit rbc_1 hemoglobin_1 hematocrit_1 mcv_1 mch_1 mchc_1 rdw_1 wbc_1 basophil_count_1 eosinophil_count_1 lymphocyte_count_1 monocyte_count_1 neutrophil_count_1 platelet_count_1 mean_platelet_volume_1
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subject5 62 visit_1 6.453427001669459 14.778690821944084 0.07160256894761835 0.11095278358164622 38.262766021325355 31.934523134355 10.04488279008542 10.919810865991021 127.73862196484127 297.5765094607528 3200.542669889818 373.21582744134145 6234.413334245976 633.6938753648045 10.97006835064897
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subject10 51 visit_1 6.6652948205240845 16.720542514009427 -0.3189528074290151 -0.4785276810965373 37.65745351407476 33.59639395933824 8.271980246357806 0.8532715059663865 290.9868977935881 172.56178956099063 1120.5514628579476 466.64368158983604 3799.630625916291 909.0321590809087 9.7554828289856
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subject20 62 visit_1 3.5748331466896133 11.08736950428935 0.9395592780790926 2.6282605076243866 37.89660613737723 33.44492874507535 9.284051722201893 11.637822281053985 309.9436754759688 87.2013977768164 3050.4948348315243 371.21765760935324 4791.230490643542 803.573928456392 6.9917024211199426
subject1 59 visit_1 4.331242107540918 14.699831955867218 1.0507007173563738 2.425864662534217 38.306928369408766 36.68741726479722 9.33625684885929 4.837801587922566 71.42772404350012 94.27227724731605 10.65974915778088 92.64244538466608 67.63941344781097 736.8528701918846 12.156038334456646
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subject3 55 visit_1 3.1980202589448847 13.047185612998463 0.5375344561422558 1.6808350561218874 40.10386511486943 34.36307073793644 9.3762735204598755 11.200648410483769 48.88121147558951 58.93912225932215 22.321686175271225 79.93157314915618 78.02542645121639 578.0545075181684 11.336490679094158
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subject8 65 visit_1 5.978826777809061 16.00499616517567 0.9333799093905899 1.5611422509427955 38.07448401003646 38.5676104111825 9.200891240400765 5.514167198490328 98.56613688039826 29.772883761288625 27.885157284530123 81.65744798624922 48.47308829934582 851.8412695389802 10.276039822533358
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subject11 61 visit_1 5.038398349541582 13.507104596895823 0.385568952474845 0.7652609534335965 37.19096031542644 32.27570772185876 9.40324132625517 7.322427283778194 53.24530426480112 19.77684802955605 49.685158953081555 29.513045299988676 67.49661696302564 907.9834930821021 11.93855445597262
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4 changes: 2 additions & 2 deletions test_data/phenotype_harmonized.tsv
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@@ -1,10 +1,10 @@
domain md5sum file_path file_readme_path n_subjects n_rows
population_descriptor a3b245349c56f8805dbb11d7aa331950 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/population_descriptor.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
population_descriptor 98316ca7ae3b5332e28e916155b844d3 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/population_descriptor.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_flags 99dee9ebbef7e7a0681d4ae5b3b0063e gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_flags.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_anthropometry d26b5af92459c0961442e2dcf7ce9235 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_anthropometry.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_blood_pressure 9877023cd800d4235e1b99a650f88694 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_blood_pressure.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_lipids 17ce825be3d94425e26c08987fa78cd9 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_lipids.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_hematology 01f2848bccf4ac09c8addd2434323a0b gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_hematology.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_hematology 155f8eac3c84a91fdb17eff3739e7799 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_hematology.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_glycemic 4af06300bac223b5462356532fa98729 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_glycemic.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
cmqt_kidney_function 35962811d3e9c081de82e4f3f8e4bfb5 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/cmqt_kidney_function.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
diabetes_diabetes bf4ff29e1312614c66a08a27b4d129c5 gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/diabetes_diabetes.tsv gs://fc-e3b6ff37-761e-4e53-89c0-fb243b8bd8e5/test_data/readme.tsv 20 20
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42 changes: 21 additions & 21 deletions test_data/population_descriptor.tsv
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@@ -1,21 +1,21 @@
subject_id population_descriptor_id population_descriptor population_label country_of_recruitment country_of_birth
subject1 022f19bfe0b628e1 population|superpopulation MSL|AFR USA Sierra Leone
subject2 01bb18a183122d64 population|superpopulation IBS|EUR Peru UK
subject3 01bb18a183122d64 population|superpopulation MXL|AMR Sierra Leone USA
subject4 01bb18a183122d64 population|superpopulation PEL|AMR Sierra Leone Sierra Leone
subject5 0224684f6cb9e980 population|superpopulation MSL|AFR Spain Sierra Leone
subject6 01bb18a183122d64 population|superpopulation PEL|AMR UK Peru
subject7 0224684f6cb9e980 population|superpopulation MSL|AFR Peru Peru
subject8 0224684f6cb9e980 population|superpopulation MSL|AFR USA Sierra Leone
subject9 0224684f6cb9e980 population|superpopulation GBR|EUR Sierra Leone Spain
subject10 01bb18a183122d64 population|superpopulation MXL|AMR Sierra Leone Sierra Leone
subject11 0224684f6cb9e980 population|superpopulation IBS|EUR Spain Peru
subject12 01bb18a183122d64 population|superpopulation GBR|EUR UK Peru
subject13 01bb18a183122d64 population|superpopulation MSL|AFR USA USA
subject14 0224684f6cb9e980 population|superpopulation MSL|AFR Spain Spain
subject15 022f19bfe0b628e1 population|superpopulation MSL|AFR Sierra Leone Spain
subject16 022f19bfe0b628e1 population|superpopulation MXL|AMR UK Peru
subject17 0224684f6cb9e980 population|superpopulation PEL|AMR Spain UK
subject18 022f19bfe0b628e1 population|superpopulation PEL|AMR USA USA
subject19 0224684f6cb9e980 population|superpopulation MSL|AFR Spain Peru
subject20 0224684f6cb9e980 population|superpopulation GBR|EUR Peru UK
subject_id population_descriptor population_label country_of_recruitment country_of_birth
subject1 population|superpopulation GBR|EUR Sierra Leone USA
subject2 population|superpopulation MSL|AFR Spain Peru
subject3 population|superpopulation MXL|AMR USA Sierra Leone
subject4 population|superpopulation MXL|AMR Peru Sierra Leone
subject5 population|superpopulation GBR|EUR Sierra Leone Spain
subject6 population|superpopulation MSL|AFR Peru UK
subject7 population|superpopulation MXL|AMR Sierra Leone Peru
subject8 population|superpopulation MSL|AFR Sierra Leone USA
subject9 population|superpopulation MXL|AMR UK Sierra Leone
subject10 population|superpopulation MXL|AMR USA Sierra Leone
subject11 population|superpopulation MXL|AMR Spain Spain
subject12 population|superpopulation IBS|EUR UK UK
subject13 population|superpopulation MSL|AFR Sierra Leone USA
subject14 population|superpopulation GBR|EUR Sierra Leone Spain
subject15 population|superpopulation MXL|AMR Sierra Leone Sierra Leone
subject16 population|superpopulation MSL|AFR USA UK
subject17 population|superpopulation MXL|AMR Peru Spain
subject18 population|superpopulation GBR|EUR Peru USA
subject19 population|superpopulation IBS|EUR Sierra Leone Spain
subject20 population|superpopulation PEL|AMR UK Peru
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