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New gsr tables #25

Merged
merged 9 commits into from
Jun 26, 2024
Merged

New gsr tables #25

merged 9 commits into from
Jun 26, 2024

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smgogarten
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@smgogarten smgogarten commented Jun 26, 2024

There can now be multiple analysis types in the GSR data model, with table names in format type_analysis, type_file and type_files_dd. Update the validate_gsr_model workflow to handle this, using a similar strategy as we do for genotype datasets.

GSR validation now allows multiple pairs of analysis/file tables.
Naming convention is expected to be <type>_analysis and
<type>_file
table paths will be in a glob* directory, so we can't use the file
paths directly output from the validate task. Instead, move
select_gsr_files to a separate task that is inside a scatter()
over pairs of analysis and file tables.
@smgogarten smgogarten merged commit 9088b4e into main Jun 26, 2024
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@smgogarten smgogarten deleted the new_gsr_tables branch June 26, 2024 21:40
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