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Merge pull request #24 from UW-GAC/womtool-ci
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Run womtool on WDL files
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amstilp authored May 29, 2024
2 parents 40fb6c3 + c265671 commit 7f53be6
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47 changes: 47 additions & 0 deletions .github/workflows/womtool.yml
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name: Womtool

# Enable Buildkit and let compose use it to speed up image building
env:
DOCKER_BUILDKIT: 1
COMPOSE_DOCKER_CLI_BUILD: 1

on:
pull_request:
branches: [ "main" ]
paths-ignore: [ "docs/**" ]

push:
branches: [ "main" ]
paths-ignore: [ "docs/**" ]

concurrency:
group: ${{ github.head_ref || github.run_id }}
cancel-in-progress: true

jobs:

run-womtool:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
wdl-file: [
./gsr_data_report.wdl,
./check_vcf_samples.wdl,
./pheno_qc/pheno_qc.wdl,
./validate_genotype_model.wdl,
./validate_gsr_model.wdl,
./validate_phenotype_model.wdl,
]

name: "Run womtool: ${{ matrix.wdl-file }}"

steps:

- name: Checkout Code Repository
uses: actions/checkout@v4

- name: Run womtool
uses: UW-GAC/womtool-action@main
with:
wdl-file: ${{ matrix.wdl-file }}

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