Code

dbGaP application views for PIs#599

Code

Merged

amstilp merged 41 commits intomainUW-GAC/primed-django:mainfrom feature/dbgap-application-views-for-pisUW-GAC/primed-django:feature/dbgap-application-views-for-pisCopy head branch name to clipboardJun 18, 2024

+3,795-343

Commits

Commits on Jun 6, 2024

• Allow a dbGaP PI to view their dbGaP application detail view

  Show description for 0215478
  amstilp

  committed
  0215478

• Allow dbGaP PIs to see DAR snapshots for their application

  Show description for e8eaae0
  amstilp

  committed
  e8eaae0

• Reduce database queries in dbGaP Detail views

  Show description for 014e538
  amstilp

  committed
  014e538

• Allow dbGaP PIs to see the DAR history page

  Show description for f4bbec4
  amstilp

  committed
  f4bbec4

Commits on Jun 7, 2024

• Show PI name instead of username in dbGaP application

  amstilp

  committed
  31a6873

• Add link to PI user profile on dbGaP application page

  amstilp

  committed
  2721588

• Track collaborators associated with a dbGaP application

  Show description for 1a53c66
  amstilp

  committed
  1a53c66

• Switch dbGaPApplicationDetail view to use MultiTableMixin

  Show description for 1f1b58e
  amstilp

  committed
  1f1b58e

• Add a table to show User, account, and group membership

  Show description for 1d99d30
  amstilp

  committed
  1d99d30

• Add a table of collaborators to the dbGaPApplicationDetail page

  Show description for 8c8e4dc
  amstilp

  committed
  8c8e4dc

• Add form and view to update dbGaP application collaborators

  amstilp

  committed
  03a5879

• Change collaborators widget to autocomplete selector

  amstilp

  committed
  19cd56c

Commits on Jun 10, 2024

• Start reworking audit namespaces

  Show description for 7edb105
  amstilp

  committed
  7edb105

Commits on Jun 11, 2024

• Move dbGaP audit code into its own subdirectory

  Show description for 0c93614
  amstilp

  committed
  0c93614

Commits on Jun 12, 2024

• Add skeleton classes for collaborator audits

  Show description for fa255f4
  amstilp

  committed
  fa255f4

• Add initial auditing classes for dbGaPCollaboratorAudit

  Show description for 068e138
  amstilp

  committed
  068e138

• Rename access audit templates for clarity

  amstilp

  committed
  9900d19

Commits on Jun 13, 2024

• Change collaborator to user in audit result classes

  Show description for b79340c
  amstilp

  committed
  b79340c

• Add definition and tests for dbGaPCollaboratorAudit view

  Show description for 9339fee
  amstilp

  committed
  9339fee

• Add a method to audit an application and a group

  Show description for 12095a8
  amstilp

  committed
  12095a8

• Dispatch audit based on object type using an internal method

  Show description for 7e2268a
  amstilp

  committed
  7e2268a

• Use case-insensitive strings when looking up objects by email

  amstilp

  committed
  15455fa

• Add view to resolve collaborator audits

  Show description for 7a112a1
  amstilp

  committed
  7a112a1

• Use admins group in settings file in audits

  Show description for 90df70b
  amstilp

  committed
  90df70b

• Add tests for collaborator audit result classes

  amstilp

  committed
  8130caa

Commits on Jun 14, 2024

• Limit the number of pytest-xdist workers to 4

  Show description for 4c9b194
  amstilp

  committed
  4c9b194

• Add tests for the dbGaPCollaboratorAuditTable

  amstilp

  committed
  e2a3eab

• Run the collaborator audit as part of the run_dbgap_audit command

  amstilp

  committed
  cbd3f05

• Clean up test coverage

  amstilp

  committed
  e72ccc6

• Allow collaborators on dbGaP applications to see info

  Show description for d2cc1da
  amstilp

  committed
  d2cc1da

• Update language on templates

  amstilp

  committed
  3f608b5

• Add collaborator audit to navbar

  Show description for 0c0ec2d
  amstilp

  committed
  0c0ec2d

• Add phenotype inventory link to navbar

  Show description for 31331f3
  amstilp

  committed
  31331f3

• Add tests for collaborator links on dbGaPApplicationDetail view

  amstilp

  committed
  216c78f

Commits on Jun 18, 2024

• Add dbGaP application info to user profile

  amstilp

  committed
  fecded2

• Clean up test coverage

  amstilp

  committed
  746736a

• Fix url in run_collaborative_analysis_audit

  Show description for 308e988
  amstilp

  committed
  308e988

• Fix accordion ids and collapse targets

  amstilp

  committed
  6619790

• Add statement when there are no associated dbGaP apps

  Show description for 9edcecc
  amstilp

  committed
  9edcecc

• Allow staff view users to see data access mechanisms

  Show description for 4e4d9d2
  amstilp

  committed
  4e4d9d2

• Add CDSA "coming soon" to profile page

  Show description for d96949e
  amstilp

  committed
  d96949e