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Merge pull request #559 from UW-GAC/deploy/stage
Deploy to prod
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@@ -20,31 +20,34 @@ concurrency: | |
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jobs: | ||
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pytest-mariadb: | ||
test: | ||
runs-on: ubuntu-latest | ||
strategy: | ||
max-parallel: 2 | ||
matrix: | ||
# While we are only running for a single version | ||
# ahead of planned upgrades we can add versions as | ||
# needed | ||
python-version: [3.8] | ||
mariadb-version: ["10.4", "10.5"] | ||
backend: ["sqlite", "mariadb"] | ||
mariadb-version: ["10.4"] | ||
include: | ||
- python-version: 3.8 # Possible future version. | ||
backend: "mariadb" | ||
mariadb-version: "10.5" | ||
name: "py${{ matrix.python-version }}-${{ matrix.backend }}-${{ matrix.mariadb-version }}" | ||
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services: | ||
mysql: | ||
# Always start mariadb, even if we are testing with the mysql backend. | ||
# Github actions do not allow conditional services yet. | ||
image: mariadb:${{ matrix.mariadb-version }} | ||
ports: | ||
- 3306:3306 | ||
env: | ||
MYSQL_ROOT_PASSWORD: root | ||
options: --tmpfs /var/lib/mysql | ||
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env: | ||
# mysql://user:password@host:port/database | ||
DATABASE_URL: "mysql://root:[email protected]:3306/mysql" | ||
# We can set this to an empty string, since we'll never make an API call. | ||
ANVIL_API_SERVICE_ACCOUNT_FILE: foo | ||
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PYTEST_ADDOPTS: "--maxfail=20" # Stop testing after too many failures. | ||
# Conditionally set the database url based on the backend. | ||
DATABASE_URL: ${{ matrix.backend == 'sqlite' && 'sqlite:///db.sqlite3' || 'mysql://root:[email protected]:3306/mysql' }} | ||
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steps: | ||
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@@ -69,60 +72,18 @@ jobs: | |
- name: Collect staticfiles | ||
run: python manage.py collectstatic --noinput --settings=config.settings.test | ||
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- name: Run tests | ||
run: coverage run -p -m pytest | ||
env: | ||
# We can set this to an empty string, since we'll never make an API call. | ||
ANVIL_API_SERVICE_ACCOUNT_FILE: foo | ||
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- name: Upload coverage data | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: coverage-data-mysql-${{ strategy.job-index }} | ||
path: .coverage.* | ||
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pytest-sqlite: | ||
runs-on: ubuntu-latest | ||
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env: | ||
# We can set this to an empty string, since we'll never make an API call. | ||
ANVIL_API_SERVICE_ACCOUNT_FILE: foo | ||
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steps: | ||
- name: Checkout Code Repository | ||
uses: actions/checkout@v4 | ||
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- name: Set up Python 3.8 | ||
uses: actions/setup-python@v5 | ||
with: | ||
python-version: 3.8 | ||
cache: pip | ||
cache-dependency-path: | | ||
requirements/requirements.txt | ||
requirements/test-requirements.txt | ||
- name: Install Dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install pip-tools | ||
pip-sync requirements/requirements.txt requirements/test-requirements.txt | ||
- name: Collect staticfiles | ||
run: python manage.py collectstatic --noinput --settings=config.settings.test | ||
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- name: Run tests | ||
run: coverage run -p -m pytest | ||
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- name: Upload coverage data | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: coverage-data-sqlite-${{ strategy.job-index }} | ||
name: coverage-data-${{ strategy.job-index }} | ||
path: .coverage.* | ||
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coverage: | ||
needs: | ||
- pytest-mariadb | ||
- pytest-sqlite | ||
- test | ||
runs-on: ubuntu-latest | ||
steps: | ||
- name: Check out the repo | ||
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Original file line number | Diff line number | Diff line change |
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@@ -15,3 +15,6 @@ MAILTO="[email protected]" | |
10 4 * * SUN . /var/www/django/primed_apps/primed-apps-activate.sh; python manage.py run_dbgap_audit --email [email protected] >> cron.log | ||
15 4 * * SUN . /var/www/django/primed_apps/primed-apps-activate.sh; python manage.py run_cdsa_audit --email [email protected] >> cron.log | ||
20 4 * * SUN . /var/www/django/primed_apps/primed-apps-activate.sh; python manage.py run_collaborative_analysis_audit --email [email protected] >> cron.log | ||
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# Nightly user data audit | ||
0 2 * * * . /var/www/django/primed_apps/primed-apps-activate.sh; python manage.py sync-drupal-data --update --email [email protected] >> cron.log |
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