Add requirements/ prefix back to requirements.txt files

Note: to do this in the future, you can find and raplce (\w*?-)?requirements\. with requirements/$1requirements. note the space at the beginning. This is because dependabot security updates remove the path prefix when running pip-compile, which causes the pip-compile check to fail. See issue: dependabot/dependabot-core#9490
UW-GAC · Jul 11, 2024 · 52713e9 · 52713e9
1 parent 461d8e7
commit 52713e9
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diff --git a/requirements/dev-requirements.txt b/requirements/dev-requirements.txt
@@ -8,7 +8,7 @@ alabaster==0.7.13
     # via sphinx
 asgiref==3.7.2
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django
 asttokens==2.4.1
     # via stack-data
@@ -18,19 +18,19 @@ backcall==0.2.0
     # via ipython
 backports-zoneinfo==0.2.1
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django
 certifi==2023.11.17
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
 cfgv==3.4.0
     # via pre-commit
 charset-normalizer==3.3.2
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
 colorama==0.4.6
     # via sphinx-autobuild
@@ -42,14 +42,14 @@ distlib==0.3.8
     # via virtualenv
 django==4.2.14
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django-debug-toolbar
     #   django-stubs
     #   django-stubs-ext
 django-debug-toolbar==4.4.5
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 django-stubs==4.2.7
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 django-stubs-ext==4.2.7
     # via django-stubs
 docutils==0.20.1
@@ -62,17 +62,17 @@ identify==2.5.34
     # via pre-commit
 idna==3.7
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
 imagesize==1.4.1
     # via sphinx
 importlib-metadata==7.0.0
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   sphinx
 ipdb==0.13.13
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 ipython==8.12.3
     # via ipdb
 jedi==0.19.1
@@ -88,15 +88,15 @@ markupsafe==2.1.5
 matplotlib-inline==0.1.6
     # via ipython
 mypy==1.10.1
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 mypy-extensions==1.0.0
     # via mypy
 nodeenv==1.8.0
     # via pre-commit
 packaging==21.3
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   sphinx
 parso==0.8.3
     # via jedi
@@ -107,7 +107,7 @@ pickleshare==0.7.5
 platformdirs==4.1.0
     # via virtualenv
 pre-commit==3.5.0
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 prompt-toolkit==3.0.43
     # via ipython
 ptyprocess==0.7.0
@@ -120,38 +120,38 @@ pygments==2.17.2
     #   sphinx
 pyparsing==3.1.1
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   packaging
 pytz==2023.3.post1
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   babel
 pyyaml==6.0.1
     # via
-    #   -c test-requirements.txt
+    #   -c requirements/test-requirements.txt
     #   pre-commit
 requests==2.32.3
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   sphinx
 ruff==0.5.1
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 six==1.16.0
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   asttokens
     #   livereload
 snowballstemmer==2.2.0
     # via sphinx
 sphinx==7.1.2
     # via
-    #   -r dev-requirements.in
+    #   -r requirements/dev-requirements.in
     #   sphinx-autobuild
 sphinx-autobuild==2021.3.14
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 sphinxcontrib-applehelp==1.0.4
     # via sphinx
 sphinxcontrib-devhelp==1.0.2
@@ -166,15 +166,15 @@ sphinxcontrib-serializinghtml==1.1.5
     # via sphinx
 sqlparse==0.5.0
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django
     #   django-debug-toolbar
 stack-data==0.6.3
     # via ipython
 tomli==2.0.1
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   django-stubs
     #   ipdb
     #   mypy
@@ -189,31 +189,31 @@ types-pytz==2024.1.0.20240203
 types-pyyaml==6.0.12.12
     # via django-stubs
 types-requests==2.32.0.20240622
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 typing-extensions==4.8.0
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   asgiref
     #   django-stubs
     #   django-stubs-ext
     #   ipython
     #   mypy
 urllib3==2.2.2
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
     #   types-requests
 virtualenv==20.25.1
     # via pre-commit
 wcwidth==0.2.13
     # via prompt-toolkit
 werkzeug==3.0.3
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 zipp==3.17.0
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file:

diff --git a/requirements/requirements.txt b/requirements/requirements.txt
@@ -5,7 +5,7 @@
 #    pip-compile requirements/requirements.in
 #
 argon2-cffi==23.1.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 argon2-cffi-bindings==21.2.0
     # via argon2-cffi
 asgiref==3.7.2
@@ -24,7 +24,7 @@ cachetools==5.3.2
     # via google-auth
 certifi==2023.11.17
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   requests
 cffi==1.16.0
     # via
@@ -38,15 +38,15 @@ click==8.1.3
     # via pip-tools
 crispy-bootstrap5==2024.2
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-anvil-consortium-manager
 cryptography==42.0.5
     # via pyjwt
 defusedxml==0.7.1
     # via python3-openid
 django==4.2.14
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   crispy-bootstrap5
     #   django-allauth
     #   django-anvil-consortium-manager
@@ -61,48 +61,48 @@ django==4.2.14
     #   django-simple-history
     #   django-tables2
 django-allauth==0.54.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-anvil-consortium-manager @ git+https://github.com/UW-GAC/[email protected]
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-autocomplete-light==3.11.0
     # via django-anvil-consortium-manager
 django-constance==3.1.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-crispy-forms==2.2
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   crispy-bootstrap5
     #   django-anvil-consortium-manager
 django-dbbackup==4.1.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-environ==0.10.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-extensions==3.2.3
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-anvil-consortium-manager
 django-filter==23.5
     # via django-anvil-consortium-manager
 django-htmx==1.18.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-login-required-middleware==0.9.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-maintenance-mode==0.21.1
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-model-utils==4.5.1
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-picklefield==3.2
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-constance
 django-simple-history==3.7.0
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-anvil-consortium-manager
 django-tables2==2.7.0
     # via django-anvil-consortium-manager
 django-tree-queries==0.19.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 fastobo==0.12.3
     # via pronto
 fontawesomefree==6.5.1
@@ -111,7 +111,7 @@ google-auth==2.28.1
     # via django-anvil-consortium-manager
 idna==3.7
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   requests
 importlib-metadata==7.0.0
     # via build
@@ -120,13 +120,13 @@ importlib-resources==6.1.1
     #   jsonschema
     #   jsonschema-specifications
 jsonapi-requests==0.7.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 jsonschema==4.22.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 jsonschema-specifications==2023.12.1
     # via jsonschema
 mysqlclient==2.2.4
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 networkx==3.1
     # via
     #   django-anvil-consortium-manager
@@ -137,22 +137,22 @@ numpy==1.24.4
     #   pandas
 oauthlib==3.2.2
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   requests-oauthlib
 packaging==21.3
     # via
     #   build
     #   plotly
 pandas==2.0.3
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 pip-tools==7.4.1
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 pkgutil-resolve-name==1.3.10
     # via jsonschema
 plotly==5.19.0
     # via django-anvil-consortium-manager
 pronto==2.5.7
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 pyasn1==0.5.1
     # via
     #   pyasn1-modules
@@ -188,7 +188,7 @@ referencing==0.33.0
     #   jsonschema-specifications
 requests==2.32.3
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-allauth
     #   django-anvil-consortium-manager
     #   jsonapi-requests
@@ -205,10 +205,10 @@ six==1.16.0
     # via python-dateutil
 sqlparse==0.5.0
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django
 tablib==3.6.1
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 tenacity==8.2.3
     # via
     #   jsonapi-requests
@@ -224,12 +224,12 @@ tzdata==2023.4
     # via pandas
 urllib3==2.2.2
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   requests
 wheel==0.42.0
     # via pip-tools
 whitenoise==6.7.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 zipp==3.17.0
     # via
     #   importlib-metadata