v1.3
Version 1.3 of the data model adds additional tables to support Pac Bio long read and ATAC short read technology. A new genetic_findings table tracks genetic findings and additional columns in the participant table track solve status. A new 'aligned' table summarizes all aligned read files for participants in the same table, similar to the experiment table.
| Version | Table | Field | Change notes |
|---|---|---|---|
| 1.3 | genetic_findings | all | table added |
| 1.3 | experiment_pac_bio | all | table added |
| 1.3 | aligned_pac_bio | all | table added |
| 1.3 | aligned_pac_bio_set | all | table added |
| 1.3 | called_variants_pac_bio | all | table added |
| 1.3 | experiment_atac_short_read | all | table added |
| 1.3 | aligned_atac_short_read | all | table added |
| 1.3 | called_peaks_atac_short_read | all | table added |
| 1.3 | allele_specific_atac_short_read | all | table added |
| 1.3 | experiment | table_name | DCC added 'experiment_nanopore, experiment_pac_bio, and experiment_atac_short_read' as valid experiment types - no impact to data submitters. |
| 1.3 | aligned | all | table added - will be populated by DCC in post-processing - no impact on data submitters. |
| 1.3 | participant | solve_status | required field added |
| 1.3 | participant | missing_variant_case | required field added |
| 1.3 | participant | missing_variant_details | optional field added |