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@smgogarten smgogarten released this 10 Sep 18:22
d5f51e4

1.6

Table Field Change notes
called_variants_nanopore variant_types added STR as enumerated value
called_variants_pac_bio variant_types added STR as enumerated value
genetic_findings experiment_id added 'see_notes' and 'see_MOD' as example values (this field will be required for validation)
genetic_findings variant_type added more specific enumerated values (possibly with delimiter) to match 'called_variants' tables
genetic_findings pos added note describing that this is .vcf-style coordinates
genetic_findings pos updated conditional requirement to align with variant_type change
genetic_findings GREGoR_variant_classification required if known disease gene
genetic_findings gene_disease_validity_notes required if known disease gene
genetic_findings gene_disease_validity_notes added; not required
genetic_findings VRS_ID added; not required
experiment_rna_short_read depletion_targets added; not required
called_variants_nanopore chrom added; not required
called_variants_pac_bio chrom added; not required
called_variants_optical_mapping chrom added; not required
aligned_nanopore num_reads changed data type to float for large number support
aligned_nanopore num_bases changed data type to float for large number support
aligned_nanopore num_aligned_reads changed data type to float for large number support
aligned_nanopore num_aligned_bases changed data type to float for large number support
aligned_nanopore read_length_mean changed data type to float
aligned_pac_bio num_reads changed data type to float for large number support
aligned_pac_bio num_bases changed data type to float for large number support
aligned_pac_bio num_aligned_reads changed data type to float for large number support
aligned_pac_bio num_aligned_bases changed data type to float for large number support
aligned_pac_bio read_length_mean changed data type to float
analyte analyte_type added PBMC as enumerated value