Releases
v1.6
1.6
Table
Field
Change notes
called_variants_nanopore
variant_types
added STR as enumerated value
called_variants_pac_bio
variant_types
added STR as enumerated value
genetic_findings
experiment_id
added 'see_notes' and 'see_MOD' as example values (this field will be required for validation)
genetic_findings
variant_type
added more specific enumerated values (possibly with delimiter) to match 'called_variants' tables
genetic_findings
pos
added note describing that this is .vcf-style coordinates
genetic_findings
pos
updated conditional requirement to align with variant_type change
genetic_findings
GREGoR_variant_classification
required if known disease gene
genetic_findings
gene_disease_validity_notes
required if known disease gene
genetic_findings
gene_disease_validity_notes
added; not required
genetic_findings
VRS_ID
added; not required
experiment_rna_short_read
depletion_targets
added; not required
called_variants_nanopore
chrom
added; not required
called_variants_pac_bio
chrom
added; not required
called_variants_optical_mapping
chrom
added; not required
aligned_nanopore
num_reads
changed data type to float for large number support
aligned_nanopore
num_bases
changed data type to float for large number support
aligned_nanopore
num_aligned_reads
changed data type to float for large number support
aligned_nanopore
num_aligned_bases
changed data type to float for large number support
aligned_nanopore
read_length_mean
changed data type to float
aligned_pac_bio
num_reads
changed data type to float for large number support
aligned_pac_bio
num_bases
changed data type to float for large number support
aligned_pac_bio
num_aligned_reads
changed data type to float for large number support
aligned_pac_bio
num_aligned_bases
changed data type to float for large number support
aligned_pac_bio
read_length_mean
changed data type to float
analyte
analyte_type
added PBMC as enumerated value
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