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Deploy to stage #301

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Oct 28, 2023
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4 changes: 1 addition & 3 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -279,9 +279,7 @@ gregor_django/media/

### test db
gregor_django.db
*.db

### dbbackups
dbbackups/



1 change: 1 addition & 0 deletions config/settings/base.py
Original file line number Diff line number Diff line change
Expand Up @@ -72,6 +72,7 @@
]
THIRD_PARTY_APPS = [
"crispy_forms",
"crispy_bootstrap5",
"allauth",
"allauth.account",
"allauth.socialaccount",
Expand Down
11 changes: 10 additions & 1 deletion gregor_django/gregor_anvil/adapters.py
Original file line number Diff line number Diff line change
@@ -1,14 +1,16 @@
from anvil_consortium_manager.adapters.account import BaseAccountAdapter
from anvil_consortium_manager.adapters.workspace import BaseWorkspaceAdapter
from anvil_consortium_manager.forms import WorkspaceForm
from django.db.models import Q

from . import forms, models, tables
from . import filters, forms, models, tables


class AccountAdapter(BaseAccountAdapter):
"""Custom account adapter for PRIMED."""

list_table_class = tables.AccountTable
list_filterset_class = filters.AccountListFilter

def get_autocomplete_queryset(self, queryset, q):
"""Filter to Accounts where the email or the associated user name matches the query `q`."""
Expand Down Expand Up @@ -36,6 +38,7 @@ class UploadWorkspaceAdapter(BaseWorkspaceAdapter):
list_table_class = tables.UploadWorkspaceTable
workspace_data_model = models.UploadWorkspace
workspace_data_form_class = forms.UploadWorkspaceForm
workspace_form_class = WorkspaceForm
workspace_detail_template_name = "gregor_anvil/uploadworkspace_detail.html"

def get_autocomplete_queryset(self, queryset, q, forwarded={}):
Expand Down Expand Up @@ -66,6 +69,7 @@ class ExampleWorkspaceAdapter(BaseWorkspaceAdapter):
workspace_data_model = models.ExampleWorkspace
workspace_data_form_class = forms.ExampleWorkspaceForm
workspace_detail_template_name = "anvil_consortium_manager/workspace_detail.html"
workspace_form_class = WorkspaceForm


class TemplateWorkspaceAdapter(BaseWorkspaceAdapter):
Expand All @@ -78,6 +82,7 @@ class TemplateWorkspaceAdapter(BaseWorkspaceAdapter):
workspace_data_model = models.TemplateWorkspace
workspace_data_form_class = forms.TemplateWorkspaceForm
workspace_detail_template_name = "gregor_anvil/templateworkspace_detail.html"
workspace_form_class = WorkspaceForm


class CombinedConsortiumDataWorkspaceAdapter(BaseWorkspaceAdapter):
Expand All @@ -92,6 +97,7 @@ class CombinedConsortiumDataWorkspaceAdapter(BaseWorkspaceAdapter):
workspace_detail_template_name = (
"gregor_anvil/combinedconsortiumdataworkspace_detail.html"
)
workspace_form_class = WorkspaceForm


class ReleaseWorkspaceAdapter(BaseWorkspaceAdapter):
Expand All @@ -104,6 +110,7 @@ class ReleaseWorkspaceAdapter(BaseWorkspaceAdapter):
workspace_data_model = models.ReleaseWorkspace
workspace_data_form_class = forms.ReleaseWorkspaceForm
workspace_detail_template_name = "gregor_anvil/releaseworkspace_detail.html"
workspace_form_class = WorkspaceForm


class DCCProcessingWorkspaceAdapter(BaseWorkspaceAdapter):
Expand All @@ -116,6 +123,7 @@ class DCCProcessingWorkspaceAdapter(BaseWorkspaceAdapter):
workspace_data_model = models.DCCProcessingWorkspace
workspace_data_form_class = forms.DCCProcessingWorkspaceForm
workspace_detail_template_name = "gregor_anvil/dccprocessingworkspace_detail.html"
workspace_form_class = WorkspaceForm


class DCCProcessedDataWorkspaceAdapter(BaseWorkspaceAdapter):
Expand All @@ -130,3 +138,4 @@ class DCCProcessedDataWorkspaceAdapter(BaseWorkspaceAdapter):
workspace_detail_template_name = (
"gregor_anvil/dccprocesseddataworkspace_detail.html"
)
workspace_form_class = WorkspaceForm
10 changes: 10 additions & 0 deletions gregor_django/gregor_anvil/filters.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
from anvil_consortium_manager.forms import FilterForm
from anvil_consortium_manager.models import Account
from django_filters import FilterSet


class AccountListFilter(FilterSet):
class Meta:
model = Account
fields = {"email": ["icontains"], "user__name": ["icontains"]}
form = FilterForm
28 changes: 28 additions & 0 deletions gregor_django/gregor_anvil/tests/test_views.py
Original file line number Diff line number Diff line change
Expand Up @@ -948,6 +948,34 @@ def test_view_with_two_objects(self):
self.assertEqual(len(response.context_data["table"].rows), 2)


class AccountListTest(TestCase):
def setUp(self):
"""Set up test class."""
self.factory = RequestFactory()
# Create a user with both view and edit permission.
self.user = User.objects.create_user(username="test", password="test")
self.user.user_permissions.add(
Permission.objects.get(
codename=acm_models.AnVILProjectManagerAccess.VIEW_PERMISSION_CODENAME
)
)

def test_filter_by_name(self):
"""Filtering by name works as expected."""
user = UserFactory.create(name="First Last")
account = acm_factories.AccountFactory.create(user=user)
other_account = acm_factories.AccountFactory.create(verified=True)
self.client.force_login(self.user)
response = self.client.get(
reverse("anvil_consortium_manager:accounts:list"),
{"user__name__icontains": "First"},
)
self.assertIn("table", response.context_data)
self.assertEqual(len(response.context_data["table"].rows), 1)
self.assertIn(account, response.context_data["table"].data)
self.assertNotIn(other_account, response.context_data["table"].data)


class UploadWorkspaceDetailTest(TestCase):
"""Tests of the anvil_consortium_manager WorkspaceDetail view using the UploadWorkspace adapter."""

Expand Down
27 changes: 24 additions & 3 deletions gregor_django/users/adapters.py
Original file line number Diff line number Diff line change
Expand Up @@ -23,15 +23,36 @@ class SocialAccountAdapter(DefaultSocialAccountAdapter):
def is_open_for_signup(self, request: HttpRequest, sociallogin: Any):
return getattr(settings, "ACCOUNT_ALLOW_REGISTRATION", True)

def update_user_name(self, user, extra_data: Dict):
def update_user_info(self, user, extra_data: Dict):
drupal_username = extra_data.get("preferred_username")
drupal_email = extra_data.get("email")
first_name = extra_data.get("first_name")
last_name = extra_data.get("last_name")
full_name = " ".join(part for part in (first_name, last_name) if part)
user_changed = False
if user.name != full_name:
logger.info(
f"[SocialAccountAdatpter:update_user_name] user {user} name updated from {user.name} to {full_name}"
f"[SocialAccountAdatpter:update_user_name] user {user} "
f"name updated from {user.name} to {full_name}"
)
user.name = full_name
user_changed = True
if user.username != drupal_username:
logger.info(
f"[SocialAccountAdatpter:update_user_name] user {user} "
f"username updated from {user.username} to {drupal_username}"
)
user.username = drupal_username
user_changed = True
if user.email != drupal_email:
logger.info(
f"[SocialAccountAdatpter:update_user_name] user {user}"
f" email updated from {user.email} to {drupal_email}"
)
user.email = drupal_email
user_changed = True

if user_changed is True:
user.save()

def update_user_partner_groups(self, user, extra_data: Dict):
Expand Down Expand Up @@ -172,7 +193,7 @@ def update_user_data(self, sociallogin: Any):
extra_data = sociallogin.account.extra_data
user = sociallogin.user

self.update_user_name(user, extra_data)
self.update_user_info(user, extra_data)
self.update_user_research_centers(user, extra_data)
self.update_user_partner_groups(user, extra_data)
self.update_user_groups(user, extra_data)
31 changes: 27 additions & 4 deletions gregor_django/users/tests/test_adapters.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,36 +36,59 @@ def test_drupal_social_login_adapter(self):
User = get_user_model()
user = User()
old_name = "Old Name"
old_username = "test"
old_email = "[email protected]"
setattr(user, account_settings.USER_MODEL_USERNAME_FIELD, "test")
setattr(user, "name", "Old Name")
setattr(user, account_settings.USER_MODEL_EMAIL_FIELD, "[email protected]")

account = SocialAccount(
provider="drupal_oauth_provider",
uid="123",
extra_data=dict(first_name="Old", last_name="Name"),
extra_data=dict(
first_name="Old",
last_name="Name",
email=old_email,
preferred_username=old_username,
),
)
sociallogin = SocialLogin(user=user, account=account)
complete_social_login(request, sociallogin)

user = User.objects.get(**{account_settings.USER_MODEL_USERNAME_FIELD: "test"})
assert SocialAccount.objects.filter(user=user, uid=account.uid).exists() is True
assert user.name == old_name
assert user.username == old_username
assert user.email == old_email

def test_update_user_research_centers(self):
def test_update_user_info(self):
adapter = SocialAccountAdapter()

User = get_user_model()
user = User()
new_name = "New Name"
new_first_name = "New"
new_last_name = "Name"
new_name = f"{new_first_name} {new_last_name}"
new_email = "[email protected]"
new_username = "newusername"
setattr(user, account_settings.USER_MODEL_USERNAME_FIELD, "test")
setattr(user, "name", "Old Name")
setattr(user, account_settings.USER_MODEL_EMAIL_FIELD, "[email protected]")

user.save()

adapter.update_user_name(user, dict(first_name="New", last_name="Name"))
adapter.update_user_info(
user,
dict(
first_name=new_first_name,
last_name=new_last_name,
email=new_email,
preferred_username=new_username,
),
)
assert user.name == new_name
assert user.email == new_email
assert user.username == new_username

def test_update_user_research_centers_add(self):
adapter = SocialAccountAdapter()
Expand Down
2 changes: 1 addition & 1 deletion requirements/base.txt
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ django-login-required-middleware==0.8.0 # https://github.com/CleitonDeLima/djang
django-dbbackup==4.0.1 # https://github.com/jazzband/django-dbbackup
django-extensions==3.2.1 # https://github.com/django-extensions/django-extensions

git+https://github.com/UW-GAC/django-anvil-consortium-manager.git@v0.17
git+https://github.com/UW-GAC/django-anvil-consortium-manager.git@v0.19

# Simple history - model history tracking
django-simple-history==3.1.1 # For tracking history
Expand Down