Merge pull request #672 from UW-GAC/combined-prs-branch

Combined PRs

requirements/dev-requirements.txt

@@ -4,8 +4,12 @@
 #
 #    pip-compile requirements/dev-requirements.in
 #
-alabaster==0.7.13
+alabaster==1.0.0
     # via sphinx
+anyio==4.4.0
+    # via
+    #   starlette
+    #   watchfiles
 asgiref==3.8.1
     # via
     #   -c requirements/requirements.txt
@@ -30,6 +34,10 @@ charset-normalizer==3.3.2
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
     #   requests
+click==8.1.7
+    # via
+    #   -c requirements/requirements.txt
+    #   uvicorn
 colorama==0.4.6
     # via sphinx-autobuild
 decorator==5.1.1
@@ -54,16 +62,23 @@ django-stubs-ext==5.0.0
     # via django-stubs
 docutils==0.20.1
     # via sphinx
+exceptiongroup==1.2.0
+    # via
+    #   -c requirements/test-requirements.txt
+    #   anyio
 executing==2.0.1
     # via stack-data
 filelock==3.13.1
     # via virtualenv
+h11==0.14.0
+    # via uvicorn
 identify==2.5.35
     # via pre-commit
 idna==3.7
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
+    #   anyio
     #   requests
 imagesize==1.4.1
     # via sphinx
@@ -77,8 +92,6 @@ jedi==0.19.1
     # via ipython
 jinja2==3.1.4
     # via sphinx
-livereload==2.6.3
-    # via sphinx-autobuild
 markupsafe==2.1.5
     # via
     #   jinja2
@@ -87,7 +100,7 @@ matplotlib-inline==0.1.6
     # via ipython
 mccabe==0.7.0
     # via pylint
-mypy==1.11.0
+mypy==1.11.1
     # via -r requirements/dev-requirements.in
 mypy-extensions==1.0.0
     # via mypy
@@ -108,7 +121,7 @@ platformdirs==4.2.0
     # via
     #   pylint
     #   virtualenv
-pre-commit==3.5.0
+pre-commit==3.8.0
     # via -r requirements/dev-requirements.in
 prompt-toolkit==3.0.43
     # via ipython
@@ -137,21 +150,22 @@ requests==2.32.3
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
     #   sphinx
-ruff==0.5.4
+ruff==0.5.6
     # via -r requirements/dev-requirements.in
 six==1.16.0
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
     #   asttokens
-    #   livereload
+sniffio==1.3.1
+    # via anyio
 snowballstemmer==2.2.0
     # via sphinx
-sphinx==7.1.2
+sphinx==8.0.2
     # via
     #   -r requirements/dev-requirements.in
     #   sphinx-autobuild
-sphinx-autobuild==2021.3.14
+sphinx-autobuild==2024.4.16
     # via -r requirements/dev-requirements.in
 sphinxcontrib-applehelp==1.0.4
     # via sphinx
@@ -163,7 +177,7 @@ sphinxcontrib-jsmath==1.0.1
     # via sphinx
 sphinxcontrib-qthelp==1.0.3
     # via sphinx
-sphinxcontrib-serializinghtml==1.1.5
+sphinxcontrib-serializinghtml==2.0.0
     # via sphinx
 sqlparse==0.5.1
     # via
@@ -172,6 +186,8 @@ sqlparse==0.5.1
     #   django-debug-toolbar
 stack-data==0.6.3
     # via ipython
+starlette==0.38.2
+    # via sphinx-autobuild
 tomli==2.0.1
     # via
     #   -c requirements/requirements.txt
@@ -180,10 +196,9 @@ tomli==2.0.1
     #   ipdb
     #   mypy
     #   pylint
+    #   sphinx
 tomlkit==0.12.3
     # via pylint
-tornado==6.4.1
-    # via livereload
 traitlets==5.14.1
     # via
     #   ipython
@@ -196,20 +211,28 @@ typing-extensions==4.8.0
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
+    #   anyio
     #   asgiref
     #   astroid
     #   django-stubs
     #   django-stubs-ext
     #   mypy
+    #   uvicorn
 urllib3==2.2.2
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
     #   requests
+uvicorn==0.30.5
+    # via sphinx-autobuild
 virtualenv==20.25.1
     # via pre-commit
+watchfiles==0.22.0
+    # via sphinx-autobuild
 wcwidth==0.2.13
     # via prompt-toolkit
+websockets==12.0
+    # via sphinx-autobuild
 werkzeug==3.0.3
     # via -r requirements/dev-requirements.in
 

requirements/test-requirements.txt

@@ -19,7 +19,7 @@ coverage[toml]==7.5.2
     #   pytest-cov
 django-coverage-plugin==3.1.0
     # via -r requirements/test-requirements.in
-django-test-migrations==1.3.0
+django-test-migrations==1.4.0
     # via -r requirements/test-requirements.in
 exceptiongroup==1.2.0
     # via pytest
@@ -42,7 +42,7 @@ packaging==23.2
     #   pytest-sugar
 pluggy==1.5.0
     # via pytest
-pytest==8.3.1
+pytest==8.3.2
     # via
     #   -r requirements/test-requirements.in
     #   pytest-cov