Merge pull request #490 from UW-GAC/main

Deploy to stage

.github/workflows/ci.yml

@@ -39,7 +39,7 @@ jobs:
       # Getting only staged files can be tricky in case a new PR is opened
       # since the action is run on a branch in detached head state
       - name: Install and Run Pre-commit
-        uses: pre-commit/[email protected].0
+        uses: pre-commit/[email protected].1
 
   pytest-mariadb:
     runs-on: ubuntu-latest

requirements/dev-requirements.txt

@@ -8,7 +8,7 @@ alabaster==0.7.13
     # via sphinx
 asgiref==3.7.2
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django
 astroid==3.0.3
     # via pylint
@@ -20,25 +20,25 @@ backcall==0.2.0
     # via ipython
 backports-zoneinfo==0.2.1
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django
-black==24.1.1
-    # via -r dev-requirements.in
+black==24.2.0
+    # via -r requirements/dev-requirements.in
 certifi==2023.7.22
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
 cfgv==3.4.0
     # via pre-commit
 charset-normalizer==3.3.2
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
 click==8.1.7
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   black
 colorama==0.4.6
     # via sphinx-autobuild
@@ -52,14 +52,14 @@ distlib==0.3.8
     # via virtualenv
 django==4.2.10
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django-debug-toolbar
     #   django-stubs
     #   django-stubs-ext
 django-debug-toolbar==4.3.0
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 django-stubs==4.2.7
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 django-stubs-ext==4.2.7
     # via django-stubs
 docutils==0.20.1
@@ -70,25 +70,25 @@ filelock==3.13.1
     # via virtualenv
 flake8==7.0.0
     # via
-    #   -r dev-requirements.in
+    #   -r requirements/dev-requirements.in
     #   flake8-isort
 flake8-isort==6.1.1
-    # via -r dev-requirements.in
-identify==2.5.33
+    # via -r requirements/dev-requirements.in
+identify==2.5.35
     # via pre-commit
 idna==3.6
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
 imagesize==1.4.1
     # via sphinx
 importlib-metadata==6.8.0
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   sphinx
 ipdb==0.13.13
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 ipython==8.12.3
     # via ipdb
 isort==5.13.2
@@ -101,7 +101,7 @@ jinja2==3.1.3
     # via sphinx
 livereload==2.6.3
     # via sphinx-autobuild
-markupsafe==2.1.4
+markupsafe==2.1.5
     # via
     #   jinja2
     #   werkzeug
@@ -112,7 +112,7 @@ mccabe==0.7.0
     #   flake8
     #   pylint
 mypy==1.8.0
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 mypy-extensions==1.0.0
     # via
     #   black
@@ -121,8 +121,8 @@ nodeenv==1.8.0
     # via pre-commit
 packaging==23.2
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   black
     #   sphinx
 parso==0.8.3
@@ -139,7 +139,7 @@ platformdirs==4.2.0
     #   pylint
     #   virtualenv
 pre-commit==3.5.0
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 prompt-toolkit==3.0.43
     # via ipython
 ptyprocess==0.7.0
@@ -159,36 +159,36 @@ pylint==3.0.3
     #   pylint-django
     #   pylint-plugin-utils
 pylint-django==2.5.5
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 pylint-plugin-utils==0.8.2
     # via pylint-django
 pytz==2023.4
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   babel
 pyyaml==6.0.1
     # via
-    #   -c test-requirements.txt
+    #   -c requirements/test-requirements.txt
     #   pre-commit
 requests==2.31.0
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   sphinx
 six==1.16.0
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   asttokens
     #   livereload
 snowballstemmer==2.2.0
     # via sphinx
 sphinx==7.1.2
     # via
-    #   -r dev-requirements.in
+    #   -r requirements/dev-requirements.in
     #   sphinx-autobuild
 sphinx-autobuild==2021.3.14
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 sphinxcontrib-applehelp==1.0.4
     # via sphinx
 sphinxcontrib-devhelp==1.0.2
@@ -203,15 +203,15 @@ sphinxcontrib-serializinghtml==1.1.5
     # via sphinx
 sqlparse==0.4.4
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   django
     #   django-debug-toolbar
 stack-data==0.6.3
     # via ipython
 tomli==2.0.1
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   black
     #   django-stubs
     #   ipdb
@@ -231,8 +231,8 @@ types-pyyaml==6.0.12.12
     # via django-stubs
 typing-extensions==4.8.0
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   asgiref
     #   astroid
     #   black
@@ -243,18 +243,18 @@ typing-extensions==4.8.0
     #   pylint
 urllib3==2.1.0
     # via
-    #   -c requirements.txt
-    #   -c test-requirements.txt
+    #   -c requirements/requirements.txt
+    #   -c requirements/test-requirements.txt
     #   requests
 virtualenv==20.25.0
     # via pre-commit
 wcwidth==0.2.13
     # via prompt-toolkit
 werkzeug==3.0.1
-    # via -r dev-requirements.in
+    # via -r requirements/dev-requirements.in
 zipp==3.17.0
     # via
-    #   -c requirements.txt
+    #   -c requirements/requirements.txt
     #   importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file:

requirements/requirements.txt

@@ -34,7 +34,7 @@ crispy-bootstrap5==2023.10
     # via
     #   -r requirements.in
     #   django-anvil-consortium-manager
-cryptography==42.0.2
+cryptography==42.0.4
     # via pyjwt
 defusedxml==0.7.1
     # via python3-openid
@@ -75,7 +75,7 @@ django-login-required-middleware==0.9.0
     # via -r requirements.in
 django-maintenance-mode==0.21.1
     # via -r requirements.in
-django-model-utils==4.3.1
+django-model-utils==4.4.0
     # via -r requirements.in
 django-simple-history==3.4.0
     # via
@@ -93,7 +93,7 @@ idna==3.6
     # via requests
 importlib-metadata==6.8.0
     # via build
-mysqlclient==2.2.3
+mysqlclient==2.2.4
     # via -r requirements.in
 networkx==3.1
     # via django-anvil-consortium-manager
@@ -107,9 +107,9 @@ packaging==23.2
     # via
     #   build
     #   plotly
-pip-tools==7.3.0
+pip-tools==7.4.0
     # via -r requirements.in
-plotly==5.18.0
+plotly==5.19.0
     # via django-anvil-consortium-manager
 pyasn1==0.4.8
     # via
@@ -124,7 +124,9 @@ pyjwt[crypto]==2.8.0
     #   -r requirements.in
     #   django-allauth
 pyproject-hooks==1.0.0
-    # via build
+    # via
+    #   build
+    #   pip-tools
 python-fsutil==0.13.1
     # via django-maintenance-mode
 python3-openid==3.2.0

requirements/test-requirements.txt

@@ -24,7 +24,7 @@ exceptiongroup==1.2.0
     # via pytest
 factory-boy==3.3.0
     # via -r requirements/test-requirements.in
-faker==22.7.0
+faker==23.2.1
     # via factory-boy
 idna==3.6
     # via
@@ -39,7 +39,7 @@ packaging==23.2
     #   pytest-sugar
 pluggy==1.4.0
     # via pytest
-pytest==8.0.0
+pytest==8.0.1
     # via
     #   -r requirements/test-requirements.in
     #   pytest-django
@@ -68,7 +68,7 @@ tomli==2.0.1
     # via
     #   -c requirements/requirements.txt
     #   pytest
-types-requests==2.31.0.20240125
+types-requests==2.31.0.20240218
     # via -r requirements/test-requirements.in
 typing-extensions==4.8.0
     # via