4. Build FrEDI Package #15
Workflow file for this run
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| ### https://github.com/actions/upload-artifact | |
| ### https://github.blog/changelog/2021-11-10-github-actions-input-types-for-manual-workflows/ | |
| ### https://docs.github.com/en/actions/using-workflows/caching-dependencies-to-speed-up-workflows | |
| ### https://github.com/r-lib/actions/tree/v2/setup-r-dependencies | |
| ### https://docs.github.com/en/actions/using-jobs/using-conditions-to-control-job-execution | |
| ### For uploading artifacts: | |
| ### "path:" is the output path where Pandoc will write the compiled PDF. | |
| ### Note, this should be the same directory as the input paper.md | |
| name: 4. Build FrEDI Package | |
| on: [workflow_dispatch] | |
| jobs: | |
| compile_data: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| name: Load Package Code | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup R package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| packages: | | |
| any::tidyverse | |
| any::ggpubr | |
| any::openxlsx | |
| any::devtools | |
| - name: Build Package | |
| run: | | |
| Rscript -e ' | |
| ### Main repo path, FrEDI project path, scripts path | |
| rPath0 <- "."; | |
| pPath0 <- rPath0 |> file.path("FrEDI") | |
| oPath0 <- pPath0 |> file.path("data", "defaultResults.rda") | |
| ###### Create Default Results ###### | |
| pPath0 |> devtools::load_all() | |
| defaultResults <- run_fredi() | |
| save(defaultResults, file=oPath0) | |
| ###### Update Documentation ###### | |
| ###### - Build Manual | |
| ###### - Add and build vignettes | |
| ###### - Generate Documentation | |
| roxygen2::roxygenise(pPath0) | |
| devtools::document(pkg = pPath0) | |
| # devtools::build_manual(pkg = pPath0) | |
| # devtools::build_vignettes(pkg = pPath0) | |
| ###### Build Package ###### | |
| ###### - Build Package but do not include vignettes | |
| # devtools::build(pkg=pPath0, path=rPath0) | |
| ' | |
| - name: Commit results | |
| run: | | |
| git config --local core.autocrlf false | |
| git config --local user.email "${{ github.actor }}@users.noreply.github.com" | |
| git config --local user.name "${{ github.actor }}" | |
| git add FrEDI/data/defaultResults.rda | |
| git add FrEDI/man/*.Rd | |
| git pull origin ${{ github.head_ref }} --autostash --rebase -X ours | |
| git commit -am "Updated documentation & default results" | |
| git push | |