4. Build FrEDI Package #11
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ### https://github.com/actions/upload-artifact | |
| ### https://github.blog/changelog/2021-11-10-github-actions-input-types-for-manual-workflows/ | |
| ### https://docs.github.com/en/actions/using-workflows/caching-dependencies-to-speed-up-workflows | |
| ### https://github.com/r-lib/actions/tree/v2/setup-r-dependencies | |
| ### https://docs.github.com/en/actions/using-jobs/using-conditions-to-control-job-execution | |
| ### For uploading artifacts: | |
| ### "path:" is the output path where Pandoc will write the compiled PDF. | |
| ### Note, this should be the same directory as the input paper.md | |
| name: Build FrEDI Package | |
| on: [workflow_dispatch] | |
| jobs: | |
| compile_data: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| name: Load Package Code | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup R package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| packages: | | |
| any::tidyverse | |
| any::ggpubr | |
| any::openxlsx | |
| any::devtools | |
| - name: Remove existing build | |
| run: | | |
| rm *.tar.gz | |
| - name: Build Package | |
| run: | | |
| Rscript -e ' | |
| ### Main repo path, FrEDI project path, scripts path | |
| rPath0 <- "."; | |
| pPath0 <- rPath0 |> file.path("FrEDI") | |
| oPath0 <- pPath0 |> file.path("data", "defaultResults.rda") | |
| ###### Create Default Results ###### | |
| pPath0 |> devtools::load_all() | |
| defaultResults <- run_fredi() | |
| save(defaultResults, file=oPath0) | |
| ###### Update Documentation ###### | |
| ###### - Build Manual | |
| ###### - Add and build vignettes | |
| ###### - Generate Documentation | |
| roxygen2::roxygenise(pPath0) | |
| devtools::document(pkg = pPath0) | |
| # devtools::build_manual(pkg = pPath0) | |
| # devtools::build_vignettes(pkg = pPath0) | |
| ###### Build Package ###### | |
| ###### - Build Package but do not include vignettes | |
| # devtools::build(pkg=pPath0, path=rPath0) | |
| ' | |
| - name: Commit results | |
| run: | | |
| git config --local core.autocrlf false | |
| git config --local user.email "${{ github.actor }}@users.noreply.github.com" | |
| git config --local user.name "${{ github.actor }}" | |
| git add FrEDI/data/defaultResults.rda | |
| git add FrEDI/man/*.Rd | |
| git pull origin ${{ github.head_ref }} --autostash --rebase -X ours | |
| git commit -am "Updated documentation & default results" | |
| git push | |