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update ref files and example data
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cristinamullin committed Oct 18, 2024
1 parent d5b99f7 commit 6cd1761
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Binary file modified data/Data_Nutrients_UT.rda
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4 changes: 2 additions & 2 deletions inst/WORDLIST
Original file line number Diff line number Diff line change
Expand Up @@ -246,6 +246,7 @@ StringA
StringB
SubstituteDeprecatedChars
SummarizeColumn
SuspectCoordinates
TADA
TADADataRetrieval
TADAGeospatialRefLayers
Expand Down Expand Up @@ -281,9 +282,8 @@ WQXMonitoringLocationTypeName
WQXRefTables
WQXResultDetectionConditionRef
WQXResultUnitConversion
WQXResultUnitCoversion
WQXTargetUnit
WQXUnitConversionFactor
WQXVal
WQXcharValRef
WQXunitRef
WaterSciCon
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Binary file modified inst/extdata/AKAllotments.dbf
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40 changes: 38 additions & 2 deletions inst/extdata/WQXCharacteristicRef.csv
Original file line number Diff line number Diff line change
Expand Up @@ -3416,6 +3416,7 @@ d","Deprecated","SULFLURAMID"
"1-chloro-1,1,2,2-tetrafluoro-2-(trifluoromethylperoxy)ethane","Accepted",""
"1-chloro-3,3,4,4,5,5-hexafluorocyclopentene","Accepted",""
"1-chloro-4-[(1,1,2,2,3,3,3-heptafluoropropane)sulfonyl]benzene","Accepted",""
"1-chloroeicosafluoro-3-oxaundecane-1-sulfonate","Accepted",""
"1-fluoro-1,3-bis(1,1,1,2,3,3,3-heptafluoropropan-2-yl)thiazirene","Accepted",""
"1-methyl-2-propyl-Cyclohexane","Accepted",""
"1-nitro-4-(pentafluoroethoxy)benzene","Accepted",""
Expand Down Expand Up @@ -8912,6 +8913,7 @@ d","Deprecated","SULFLURAMID"
"7229-93-8","Accepted",""
"7:1 Fluorotelomer amino ethyl trimethyl ammonium","Accepted",""
"7:2 Fluorotelomer ketone sulfonate","Accepted",""
"7:3 perfluorodecanoate","Accepted",""
"7H-Dibenzo(b,g)carbazole, 7-methyl-","Accepted",""
"7H-Perfluoroheptanal","Accepted",""
"7H-Perfluoroheptanamide","Accepted",""
Expand Down Expand Up @@ -10977,6 +10979,7 @@ d","Deprecated","SULFLURAMID"
"Bufencarb","Accepted",""
"Bulan","Accepted",""
"Bulan mixt. with 2-nitro-1,1-bis(p-chlorophenyl)propane","Accepted",""
"Bulk Density","Accepted",""
"Bumetanide","Accepted",""
"Bumetanide-d5","Accepted",""
"Buprenorphine","Accepted",""
Expand Down Expand Up @@ -12273,6 +12276,7 @@ d","Deprecated","SULFLURAMID"
"DL-Amphetamine-D5","Accepted",""
"Dacarbazine","Accepted",""
"Dacthal Acid Metabolites","Accepted",""
"Dacthal metabolites (tetrachloroterephthalic acid and monomethyl tetrachloroterephthalic acid)","Accepted",""
"Daidzein","Accepted",""
"Dalapon","Accepted",""
"Daminozide","Accepted",""
Expand Down Expand Up @@ -13572,6 +13576,7 @@ d","Deprecated","SULFLURAMID"
"Excavated, trapezoidal channel (%)","Accepted",""
"Exchangeable phosphorus","Accepted",""
"Exotic Plant Removal Disturbance (choice list)","Accepted",""
"Exotic plant species coverage","Accepted",""
"Extended diesel range organics C10-C36","Accepted",""
"External condition (text)","Accepted",""
"Extract volume","Accepted",""
Expand Down Expand Up @@ -13853,6 +13858,7 @@ d","Deprecated","SULFLURAMID"
"Fonofos","Accepted",""
"Fonofos oxon","Accepted",""
"Foramsulfuron","Accepted",""
"Forb Coverage","Accepted",""
"Forchlorfenuron","Accepted",""
"Forest Age (choice list)","Accepted",""
"Formaldehyde","Accepted",""
Expand Down Expand Up @@ -14045,6 +14051,7 @@ d","Deprecated","SULFLURAMID"
"Grain size, sand","Accepted",""
"Grain size, silt","Accepted",""
"Grain size, substrate","Accepted",""
"Graminoid coverage","Accepted",""
"Gran acid neutralizing capacity","Accepted",""
"Gravel","Accepted",""
"Gravel 16 - 32 mm","Accepted",""
Expand All @@ -14067,6 +14074,8 @@ d","Deprecated","SULFLURAMID"
"Ground Cover Standing Water (choice list)","Accepted",""
"Ground Coverage Bare (choice list)","Accepted",""
"Ground Coverage Herbaceous (choice list)","Accepted",""
"Ground cover","Accepted",""
"Ground coverage bare","Accepted",""
"Groundwater level","Accepted",""
"Growth","Accepted",""
"Growth/Biomass","Accepted",""
Expand Down Expand Up @@ -15156,6 +15165,7 @@ d","Deprecated","SULFLURAMID"
"Lithium-7/Lithium-6 ratio","Accepted",""
"Lithium/calcium ratio","Accepted",""
"Lithology code","Accepted",""
"Litter Coverage","Accepted",""
"Littoral Cover Complexity Index","Accepted",""
"Littoral Fish Microhabitat: Cover Class","Accepted",""
"Littoral Fish Microhabitat: Cover Type","Accepted",""
Expand Down Expand Up @@ -16817,15 +16827,22 @@ d","Deprecated","SULFLURAMID"
"Novaluron","Accepted",""
"Noviflumuron","Accepted",""
"Number of Boats","Accepted",""
"Number of Exotic species","Accepted",""
"Number of Shrub species","Accepted",""
"Number of Tolerance Species all Plots","Accepted",""
"Number of Tree Species","Accepted",""
"Number of forb species","Accepted",""
"Number of graminoid species","Accepted",""
"Number of individuals***retired***use Individuals examined, actual number","Deprecated","INDIVIDUALS EXAMINED, ACTUAL NUMBER"
"Number of native species","Accepted",""
"Number of pedicels per sample plant","Accepted",""
"Number of rice stalks","Accepted",""
"Number of sampling points","Accepted",""
"Number of seeds with ergots","Accepted",""
"Number of seeds with worm holes","Accepted",""
"Number of stalks per sample plant","Accepted",""
"Number of valves","Accepted",""
"Number of vine species","Accepted",""
"Nutrient-nitrogen***retired***use TOTAL NITROGEN, MIXED FORMS with speciation AS N","Deprecated","TOTAL NITROGEN, MIXED FORMS"
"Nylon deterioration","Accepted",""
"N~1~,N~1~,N~5~,N~5~-Tetrakis(2-chloroethyl)-2,2,3,3,4,4-hexafluoropentane-1,5-diamine--hydrogen chloride (1/1)","Accepted",""
Expand Down Expand Up @@ -17741,6 +17758,7 @@ d","Deprecated","SULFLURAMID"
"Perfluoro(2-bromoethoxy)ethene","Accepted",""
"Perfluoro(2-ethoxy-2-fluoroethoxy)acetic acid ammonium salt","Accepted",""
"Perfluoro(2-ethoxyethane) sulfonate","Accepted",""
"Perfluoro(2-ethoxyethane)sulfonate","Accepted",""
"Perfluoro(2-ethoxyethane)sulfonic acid","Accepted",""
"Perfluoro(2-methylpent-2-ene)","Accepted",""
"Perfluoro(2-propoxypropanoate)","Accepted",""
Expand Down Expand Up @@ -17944,6 +17962,7 @@ d","Deprecated","SULFLURAMID"
"Perfluoro-4-hexene-1-sulfonic acid","Accepted",""
"Perfluoro-4-hexenesulfonic acid","Accepted",""
"Perfluoro-4-isopropoxybutanoic acid","Accepted",""
"Perfluoro-4-methoxybutanoate","Accepted",""
"Perfluoro-4-methoxybutanoic acid","Accepted",""
"Perfluoro-4-methylcyclopentane-1-carboxylic acid","Accepted",""
"Perfluoro-4-methylheptanoic acid","Accepted",""
Expand Down Expand Up @@ -19099,6 +19118,7 @@ d","Deprecated","SULFLURAMID"
"Pregna-1,4-diene-3,20-dione, 11,17,21-trihydroxy-6-methyl-, (6.alpha.,11.beta.)-","Accepted",""
"Presence of exotic species (Y/N) (choice list)","Accepted",""
"Presence of freshwater sponge (Y/N) (choice list)","Accepted",""
"Presence of gley within soil (choice list) (Y/N)","Accepted",""
"Presence of pathogens or pests (choice list)","Accepted",""
"Pressure","Accepted",""
"Presumptive Aeromonas","Accepted",""
Expand Down Expand Up @@ -19900,6 +19920,7 @@ d","Deprecated","SULFLURAMID"
"Redoximorphic Features Color: Chroma","Accepted",""
"Redoximorphic Features Color: Hue","Accepted",""
"Redoximorphic Features Color: Value","Accepted",""
"Redoximorphic features present in soil (choice list) (Y/N)","Accepted",""
"Refined used lubricating oils","Accepted",""
"Relative Air Temperature (choice list)","Accepted",""
"Relative Density Species","Accepted",""
Expand Down Expand Up @@ -19945,6 +19966,7 @@ d","Deprecated","SULFLURAMID"
"Rhynchelmis","Accepted",""
"Rhynchobdellida","Accepted",""
"Rhysophora","Accepted",""
"Ribbon Length","Accepted",""
"Ricin","Accepted",""
"Riffle (with flow) present in reach (Y/N) (choice list)","Accepted",""
"Riffle (with flow) present outside of reach (Y/N) (choice list)","Accepted",""
Expand Down Expand Up @@ -20016,6 +20038,7 @@ d","Deprecated","SULFLURAMID"
"Roederiodes","Accepted",""
"Ronnel","Accepted",""
"Root Jabs","Accepted",""
"Root Mass","Accepted",""
"Root weight","Accepted",""
"Rooted or floating plants restrict access to waterbody (Y/N) (choice list)","Accepted",""
"Rosgen Stream Type","Accepted",""
Expand Down Expand Up @@ -20186,6 +20209,7 @@ d","Deprecated","SULFLURAMID"
"Shore Type - Other revetment","Accepted",""
"Shore Type - Riprap","Accepted",""
"Shore Type - Stable Bank","Accepted",""
"Shrub Coverage","Accepted",""
"Sida","Accepted",""
"Side Channel (Y/N) (choice list)","Accepted",""
"Sididae","Accepted",""
Expand Down Expand Up @@ -20535,11 +20559,14 @@ d","Deprecated","SULFLURAMID"
"Sodium-24","Accepted",""
"Soft/Small Sediment Present (Y/N) (choice list)","Accepted",""
"Soil Color Change after Exposure to Air (Y/N) (choice list)","Accepted",""
"Soil Conductivity","Accepted",""
"Soil Layer (choice list)","Accepted",""
"Soil Metric Color (Moist): Chroma","Accepted",""
"Soil Metric Color (Moist): Hue","Accepted",""
"Soil Metric Color (Moist): Value","Accepted",""
"Soil Moisture","Accepted",""
"Soil Organic Features Present","Accepted",""
"Soil Organic Matter","Accepted",""
"Soil Saturation Evidence: Crayfish burrows (choice list)","Accepted",""
"Soil Saturation Evidence: Dry season water table (choice list)","Accepted",""
"Soil Saturation Evidence: Fiddler crab burrows (choice list)","Accepted",""
Expand All @@ -20550,7 +20577,9 @@ d","Deprecated","SULFLURAMID"
"Soil Saturation Evidence: Salt deposits (choice list)","Accepted",""
"Soil Saturation Evidence: Thin muck surface (choice list)","Accepted",""
"Soil Texture: Organic (choice list)","Accepted",""
"Soil Type","Accepted",""
"Soil Water","Accepted",""
"Soil ammonium content","Accepted",""
"Soil index, coefficient of haze (COH)","Accepted",""
"Solar irradiation, global","Accepted",""
"Solar irradiation, local","Accepted",""
Expand Down Expand Up @@ -20602,6 +20631,7 @@ d","Deprecated","SULFLURAMID"
"Split Count","Accepted",""
"Spongilla","Accepted",""
"Spongillidae","Accepted",""
"Spring Depth to Water","Accepted",""
"Spring Type (choice list)","Accepted",""
"Spring, % Flow Volume Affected by Modification","Accepted",""
"Spring, Channel Count Within 50 Meters","Accepted",""
Expand Down Expand Up @@ -20819,7 +20849,7 @@ d","Deprecated","SULFLURAMID"
"Sulfathiazole","Accepted",""
"Sulfation rate","Accepted",""
"Sulfentrazone","Accepted",""
"Sulfentrazone-3-carboxylic acid","Accepted",""
"Sulfentrazone 3-carboxylic acid","Accepted",""
"Sulfide","Accepted",""
"Sulfite","Accepted",""
"Sulfluramid","Accepted",""
Expand Down Expand Up @@ -21330,6 +21360,7 @@ d","Deprecated","SULFLURAMID"
"Top of bank width","Accepted",""
"Topiramate","Accepted",""
"Topramezone","Accepted",""
"Topsoil Nitrogen Content","Accepted",""
"Torasemide","Accepted",""
"Torrent Deposition-Massive deposits of sediment, logs, and debris in the reach (Y/N) (choice list)","Accepted",""
"Torrent Deposition-Stream has begun to erode newly laid matrix supported deposits (Y/N) (choice list)","Accepted",""
Expand Down Expand Up @@ -21420,7 +21451,7 @@ d","Deprecated","SULFLURAMID"
"Toxaphene Parlar 21","Accepted",""
"Toxaphene Parlar 25","Accepted",""
"Toxaphene Parlar 26","Accepted",""
"Toxaphene Parlar 26*","Accepted",""
"Toxaphene Parlar 26***","Accepted",""
"Toxaphene Parlar 31/32","Accepted",""
"Toxaphene Parlar 38","Accepted",""
"Toxaphene Parlar 39","Accepted",""
Expand Down Expand Up @@ -21499,6 +21530,8 @@ d","Deprecated","SULFLURAMID"
"Transphilic fraction of organic carbon","Accepted",""
"Traseolide","Accepted",""
"Trazodone","Accepted",""
"Treatment category","Accepted",""
"Tree Coverage","Accepted",""
"Tremolite asbestos","Accepted",""
"Trenbolone","Accepted",""
"Trenbolone acetate","Accepted",""
Expand Down Expand Up @@ -21962,6 +21995,7 @@ d","Deprecated","SULFLURAMID"
"Vilazodone carboxylic acid-d4","Accepted",""
"Vincamine","Accepted",""
"Vinclozolin","Accepted",""
"Vine Coverage","Accepted",""
"Vinyl 1H,1H,3H-perfluoropropyl ether","Accepted",""
"Vinyl 3-chloro-2,2,3,3-tetrafluoropropionate","Accepted",""
"Vinyl acetate","Accepted",""
Expand Down Expand Up @@ -22005,6 +22039,7 @@ d","Deprecated","SULFLURAMID"
"Volume, total","Accepted",""
"Vomitoxin","Accepted",""
"Vortioxetine","Accepted",""
"WIS habitat type (choice list)","Accepted",""
"Warfarin","Accepted",""
"Warfarin-d5","Accepted",""
"Waste well annulus pressure","Accepted",""
Expand Down Expand Up @@ -22383,6 +22418,7 @@ d","Deprecated","SULFLURAMID"
"cis-Propiconazole","Accepted",""
"cis/trans-2-Butene","Accepted",""
"cis/trans-2-Hexene","Accepted",""
"coefficient of conservatism","Accepted",""
"compound ""C"" (part of chlordane total)","Accepted",""
"compound ""K"" (part of chlordane total)","Accepted",""
"d-cis-trans-Allethrin","Accepted",""
Expand Down
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