Run tests in CI (#5)

* attempt to run tests in cicd

* add PAT

* update coverage reporting

* add coverage report to gitignore

.github/workflows/main.yml

@@ -24,10 +24,10 @@ jobs:
     - name: Checkout bmds@next
       uses: actions/checkout@v3
       with:
-        repository: shapiromatron/bmds
+        repository: USEPA/bmds-private
         path: venv
         ref: next
-        lfs: true
+        token: ${{ secrets.USEPA_BMDS_PRIVATE_PAT }}
     - uses: actions/setup-python@v4
       with:
         python-version: '3.11'
@@ -71,7 +71,6 @@ jobs:
       run: |
         export "LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH"
         coverage run -m pytest --vcr-record=none
-        coverage html -d coverage_report
         echo "# Python coverage report" >> $GITHUB_STEP_SUMMARY
         coverage report --format=markdown >> $GITHUB_STEP_SUMMARY
 
@@ -145,10 +144,10 @@ jobs:
     - name: Checkout bmds@next
       uses: actions/checkout@v3
       with:
-        repository: shapiromatron/bmds
+        repository: USEPA/bmds-private
         path: venv
         ref: next
-        lfs: true
+        token: ${{ secrets.USEPA_BMDS_PRIVATE_PAT }}
     - uses: actions/setup-python@v4
       with:
         python-version: '3.11'

.gitignore

@@ -9,6 +9,7 @@
 bmds_server/static/bundles/
 build/
 /data/
+coverage_report/
 dist/
 docs/site/
 node_modules/

Makefile

@@ -56,6 +56,11 @@ test-integration-debug:  ## Run integration tests in debug mode (requires npm ru
 	@playwright install --with-deps chromium
 	@INTEGRATION_TESTS=1 PWDEBUG=1 py.test -sv tests/integration/
 
+coverage: ## Run test coverage
+	coverage run -m pytest
+	coverage html -d coverage_report
+	$(BROWSER) coverage_report/index.html
+
 docs: ## Build documentation
 	cd docs; mkdocs build --strict
 

pyproject.toml

@@ -1,5 +1,6 @@
 [tool.coverage.run]
 omit = [
+    "../bmds/*",
     "./bmds_server/main/settings/*",
     "./tests/*",
     "./venv/*",