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Turningl authored Dec 14, 2024
1 parent a9b034c commit 58cac1c
Showing 1 changed file with 8 additions and 2 deletions.
10 changes: 8 additions & 2 deletions dataloader.py
Original file line number Diff line number Diff line change
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parser = argparse.ArgumentParser()
parser.add_argument('--root', type=str, choices=['MoleculeNet, DrugBank, BIOSNAP, LITPCBA, CoCrystal'],
help='choose the dataset, start with the path to dataset dir.')
parser.add_argument('--dataset', default='tox21', type=str)
parser.add_argument('--dataset', type=str,
choices=['MoleculeNet: bbbp', 'MoleculeNet: bace', 'MoleculeNet: sider', 'MoleculeNet: tox21',
'MoleculeNet: toxcast','MoleculeNet: esol', 'MoleculeNet: lipo', 'MoleculeNet: freesolv',
'LIT-PCBA: ALDH1', 'LIT-PCBA: FEN1', 'LIT-PCBA: GBA', 'LIT-PCBA: KAT2A',
'LIT-PCBA: MAPK1', 'LIT-PCBA: PKM2', 'LIT-PCBA: VDR',
'DrugBank: DrugBank', 'CoCrystal: CoCrystal', 'BIOSNAP: BIOSNAP'],
help='dataset is directly related to root.')
parser.add_argument('--split', type=str, choices=['smi, smi1, smi2, random'],
help='Choose a data splitting method.') # MoleculeNet and LITPCBA we use smi, DrugBank, BIOSNAP and CoCrystal we use smi1, smi1
help='Choose a data splitting method.') # MoleculeNet and LITPCBA we use smi, DrugBank, BIOSNAP and CoCrystal we use smi1, smi2
parser.add_argument('--seed', default=4567, type=int, choices=[1234, 4567, 7890],
help='Initialize random number seeds for model training and data splitting.')
parser.add_argument('--device', default='cuda', type=str,
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