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Update manifest files
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@yebai
yebai authored Oct 28, 2023
1 parent 86ab4e5 commit ee01724
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113 changes: 64 additions & 49 deletions tutorials/00-introduction/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -39,9 +39,9 @@ version = "0.4.4"

[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "3.6.2"
version = "3.7.1"
weakdeps = ["StaticArrays"]

[deps.Adapt.extensions]
Expand All @@ -65,9 +65,9 @@ version = "0.5.5"

[[deps.AdvancedMH]]
deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"]
git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4"
git-tree-sha1 = "5c8f8fdf6588984ee29e08d7129b4a07d23fa52b"
uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170"
version = "0.7.5"
version = "0.7.6"
weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"]

[deps.AdvancedMH.extensions]
Expand Down Expand Up @@ -231,15 +231,19 @@ version = "0.5.1"

[[deps.ChainRules]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3"
git-tree-sha1 = "7e4f5593e7e1ab923cebc5414f6d5433872cdd19"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.55.0"
version = "1.56.0"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491"
deps = ["Compat", "LinearAlgebra"]
git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.17.0"
version = "1.18.0"
weakdeps = ["SparseArrays"]

[deps.ChainRulesCore.extensions]
ChainRulesCoreSparseArraysExt = "SparseArrays"

[[deps.ChangesOfVariables]]
deps = ["LinearAlgebra", "Test"]
Expand All @@ -259,9 +263,9 @@ version = "0.15.5"

[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.2"
version = "0.7.3"

[[deps.ColorSchemes]]
deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
Expand Down Expand Up @@ -476,9 +480,9 @@ version = "0.6.8"

[[deps.DynamicPPL]]
deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"]
git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f"
git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e"
uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8"
version = "0.23.19"
version = "0.23.21"
weakdeps = ["MCMCChains"]

[deps.DynamicPPL.extensions]
Expand Down Expand Up @@ -547,9 +551,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"

[[deps.FillArrays]]
deps = ["LinearAlgebra", "Random"]
git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "1.6.1"
version = "1.7.0"
weakdeps = ["SparseArrays", "Statistics"]

[deps.FillArrays.extensions]
Expand Down Expand Up @@ -711,9 +715,9 @@ version = "0.14.7"

[[deps.IntervalSets]]
deps = ["Dates", "Random"]
git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6"
git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
uuid = "8197267c-284f-5f27-9208-e0e47529a953"
version = "0.7.7"
version = "0.7.8"
weakdeps = ["Statistics"]

[deps.IntervalSets.extensions]
Expand Down Expand Up @@ -747,9 +751,9 @@ version = "1.0.0"

[[deps.JLFzf]]
deps = ["Pipe", "REPL", "Random", "fzf_jll"]
git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
version = "0.1.5"
version = "0.1.6"

[[deps.JLLWrappers]]
deps = ["Artifacts", "Preferences"]
Expand Down Expand Up @@ -800,16 +804,22 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d"
version = "3.0.0+1"

[[deps.LLVM]]
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366"
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "6.3.0"
version = "6.4.0"

[deps.LLVM.extensions]
BFloat16sExt = "BFloat16s"

[deps.LLVM.weakdeps]
BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"

[[deps.LLVMExtra_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2"
git-tree-sha1 = "a84f8f1e8caaaa4e3b4c101306b9e801d3883ace"
uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
version = "0.0.26+0"
version = "0.0.27+0"

[[deps.LLVMOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -996,9 +1006,9 @@ version = "1.0.3"

[[deps.MCMCChains]]
deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"]
git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b"
git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2"
uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
version = "6.0.3"
version = "6.0.4"

[[deps.MCMCDiagnosticTools]]
deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"]
Expand All @@ -1014,9 +1024,9 @@ version = "2023.2.0+0"

[[deps.MLJModelInterface]]
deps = ["Random", "ScientificTypesBase", "StatisticalTraits"]
git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5"
git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223"
uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea"
version = "1.9.2"
version = "1.9.3"

[[deps.MacroTools]]
deps = ["Markdown", "Random"]
Expand Down Expand Up @@ -1188,9 +1198,9 @@ version = "10.42.0+0"

[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8"
git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.26"
version = "0.11.28"

[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
Expand Down Expand Up @@ -1260,9 +1270,9 @@ version = "1.4.1"

[[deps.PrettyTables]]
deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a"
git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "2.2.7"
version = "2.2.8"

[[deps.Printf]]
deps = ["Unicode"]
Expand Down Expand Up @@ -1347,9 +1357,9 @@ version = "0.6.12"

[[deps.RecursiveArrayTools]]
deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7"
git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8"
uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
version = "2.39.0"
version = "2.38.10"

[deps.RecursiveArrayTools.extensions]
RecursiveArrayToolsMeasurementsExt = "Measurements"
Expand Down Expand Up @@ -1422,17 +1432,19 @@ version = "0.7.0"

[[deps.SciMLBase]]
deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817"
git-tree-sha1 = "1c2a4e245744dd76b2eb677d3535ffad16d8b989"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.4.0"
version = "2.5.0"

[deps.SciMLBase.extensions]
SciMLBasePartialFunctionsExt = "PartialFunctions"
SciMLBasePyCallExt = "PyCall"
SciMLBasePythonCallExt = "PythonCall"
SciMLBaseRCallExt = "RCall"
SciMLBaseZygoteExt = "Zygote"

[deps.SciMLBase.weakdeps]
PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b"
PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
Expand Down Expand Up @@ -1495,9 +1507,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

[[deps.SortingAlgorithms]]
deps = ["DataStructures"]
git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "1.1.1"
version = "1.2.0"

[[deps.SparseArrays]]
deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
Expand Down Expand Up @@ -1626,9 +1638,9 @@ version = "1.0.1"

[[deps.Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.11.0"
version = "1.11.1"

[[deps.Tar]]
deps = ["ArgTools", "SHA"]
Expand Down Expand Up @@ -1662,10 +1674,13 @@ weakdeps = ["PDMats"]
TrackerPDMatsExt = "PDMats"

[[deps.TranscodingStreams]]
deps = ["Random", "Test"]
git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
git-tree-sha1 = "49cbf7c74fafaed4c529d47d48c8f7da6a19eb75"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.9.13"
version = "0.10.1"
weakdeps = ["Random", "Test"]

[deps.TranscodingStreams.extensions]
TestExt = ["Test", "Random"]

[[deps.Transducers]]
deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
Expand Down Expand Up @@ -1700,9 +1715,9 @@ version = "1.4.0"

[[deps.Turing]]
deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499"
git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489"
uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
version = "0.29.2"
version = "0.29.3"

[deps.Turing.extensions]
TuringDynamicHMCExt = "DynamicHMC"
Expand Down Expand Up @@ -1968,9 +1983,9 @@ version = "1.5.5+0"

[[deps.ZygoteRules]]
deps = ["ChainRulesCore", "MacroTools"]
git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d"
git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184"
uuid = "700de1a5-db45-46bc-99cf-38207098b444"
version = "0.2.3"
version = "0.2.4"

[[deps.eudev_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
Expand All @@ -1980,9 +1995,9 @@ version = "3.2.9+0"

[[deps.fzf_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
version = "0.29.0+0"
version = "0.35.1+0"

[[deps.gperf_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down
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