Update manifest files

TuringLang · Oct 21, 2023 · 6b3df0a · 6b3df0a
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diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml
@@ -236,10 +236,14 @@ uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
 version = "1.55.0"
 
 [[deps.ChainRulesCore]]
-deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491"
+deps = ["Compat", "LinearAlgebra"]
+git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.17.0"
+version = "1.18.0"
+weakdeps = ["SparseArrays"]
+
+    [deps.ChainRulesCore.extensions]
+    ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.ChangesOfVariables]]
 deps = ["LinearAlgebra", "Test"]
@@ -259,9 +263,9 @@ version = "0.15.5"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
@@ -547,9 +551,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random"]
-git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
+git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.6.1"
+version = "1.7.0"
 weakdeps = ["SparseArrays", "Statistics"]
 
     [deps.FillArrays.extensions]
@@ -711,9 +715,9 @@ version = "0.14.7"
 
 [[deps.IntervalSets]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6"
+git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.7.7"
+version = "0.7.8"
 weakdeps = ["Statistics"]
 
     [deps.IntervalSets.extensions]
@@ -747,9 +751,9 @@ version = "1.0.0"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -1014,9 +1018,9 @@ version = "2023.2.0+0"
 
 [[deps.MLJModelInterface]]
 deps = ["Random", "ScientificTypesBase", "StatisticalTraits"]
-git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5"
+git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223"
 uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea"
-version = "1.9.2"
+version = "1.9.3"
 
 [[deps.MacroTools]]
 deps = ["Markdown", "Random"]
@@ -1188,9 +1192,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8"
+git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.26"
+version = "0.11.28"
 
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
@@ -1260,9 +1264,9 @@ version = "1.4.1"
 
 [[deps.PrettyTables]]
 deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a"
+git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "2.2.7"
+version = "2.2.8"
 
 [[deps.Printf]]
 deps = ["Unicode"]
@@ -1347,9 +1351,9 @@ version = "0.6.12"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7"
+git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.39.0"
+version = "2.38.10"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsMeasurementsExt = "Measurements"
@@ -1422,9 +1426,9 @@ version = "0.7.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817"
+git-tree-sha1 = "9c4f861661e72d9257834d8e517d4511e91ca43b"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.4.0"
+version = "2.4.2"
 
     [deps.SciMLBase.extensions]
     SciMLBasePyCallExt = "PyCall"
@@ -1495,9 +1499,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.1"
+version = "1.2.0"
 
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@@ -1626,9 +1630,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -1662,10 +1666,13 @@ weakdeps = ["PDMats"]
     TrackerPDMatsExt = "PDMats"
 
 [[deps.TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "49cbf7c74fafaed4c529d47d48c8f7da6a19eb75"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.1"
+weakdeps = ["Random", "Test"]
+
+    [deps.TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
 
 [[deps.Transducers]]
 deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
@@ -1700,9 +1707,9 @@ version = "1.4.0"
 
 [[deps.Turing]]
 deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499"
+git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489"
 uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
-version = "0.29.2"
+version = "0.29.3"
 
     [deps.Turing.extensions]
     TuringDynamicHMCExt = "DynamicHMC"
@@ -1980,9 +1987,9 @@ version = "3.2.9+0"
 
 [[deps.fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
 
 [[deps.gperf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]

diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml
@@ -236,10 +236,14 @@ uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
 version = "1.55.0"
 
 [[deps.ChainRulesCore]]
-deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491"
+deps = ["Compat", "LinearAlgebra"]
+git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.17.0"
+version = "1.18.0"
+weakdeps = ["SparseArrays"]
+
+    [deps.ChainRulesCore.extensions]
+    ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.ChangesOfVariables]]
 deps = ["LinearAlgebra", "Test"]
@@ -259,9 +263,9 @@ version = "0.15.5"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
@@ -547,9 +551,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random"]
-git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
+git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.6.1"
+version = "1.7.0"
 weakdeps = ["SparseArrays", "Statistics"]
 
     [deps.FillArrays.extensions]
@@ -711,9 +715,9 @@ version = "0.14.7"
 
 [[deps.IntervalSets]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6"
+git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.7.7"
+version = "0.7.8"
 weakdeps = ["Statistics"]
 
     [deps.IntervalSets.extensions]
@@ -747,9 +751,9 @@ version = "1.0.0"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -1014,9 +1018,9 @@ version = "2023.2.0+0"
 
 [[deps.MLJModelInterface]]
 deps = ["Random", "ScientificTypesBase", "StatisticalTraits"]
-git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5"
+git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223"
 uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea"
-version = "1.9.2"
+version = "1.9.3"
 
 [[deps.MacroTools]]
 deps = ["Markdown", "Random"]
@@ -1188,9 +1192,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8"
+git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.26"
+version = "0.11.28"
 
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
@@ -1260,9 +1264,9 @@ version = "1.4.1"
 
 [[deps.PrettyTables]]
 deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a"
+git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "2.2.7"
+version = "2.2.8"
 
 [[deps.Printf]]
 deps = ["Unicode"]
@@ -1347,9 +1351,9 @@ version = "0.6.12"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7"
+git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.39.0"
+version = "2.38.10"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsMeasurementsExt = "Measurements"
@@ -1422,9 +1426,9 @@ version = "0.7.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817"
+git-tree-sha1 = "9c4f861661e72d9257834d8e517d4511e91ca43b"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.4.0"
+version = "2.4.2"
 
     [deps.SciMLBase.extensions]
     SciMLBasePyCallExt = "PyCall"
@@ -1495,9 +1499,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.1"
+version = "1.2.0"
 
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@@ -1626,9 +1630,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -1662,10 +1666,13 @@ weakdeps = ["PDMats"]
     TrackerPDMatsExt = "PDMats"
 
 [[deps.TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "49cbf7c74fafaed4c529d47d48c8f7da6a19eb75"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.1"
+weakdeps = ["Random", "Test"]
+
+    [deps.TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
 
 [[deps.Transducers]]
 deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
@@ -1700,9 +1707,9 @@ version = "1.4.0"
 
 [[deps.Turing]]
 deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499"
+git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489"
 uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
-version = "0.29.2"
+version = "0.29.3"
 
     [deps.Turing.extensions]
     TuringDynamicHMCExt = "DynamicHMC"
@@ -1980,9 +1987,9 @@ version = "3.2.9+0"
 
 [[deps.fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
 
 [[deps.gperf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]