Replace old Gibbs sampler with the experimental one. #421
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| # Cancel existing tests on the same PR if a new commit is added to a pull request | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref || github.run_id }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| jobs: | |
| test: | |
| # Use matrix.test.name here to avoid it taking up the entire window width | |
| name: test ${{matrix.test.name}} (${{ matrix.runner.os }}, ${{ matrix.runner.version }}, ${{ matrix.runner.arch }}, ${{ matrix.runner.num_threads }}) | |
| runs-on: ${{ matrix.runner.os }} | |
| continue-on-error: ${{ matrix.runner.version == 'pre' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| test: | |
| # Run some of the slower test files individually. The last one catches everything | |
| # not included in the others. | |
| - name: "essential/ad" | |
| args: "essential/ad.jl" | |
| - name: "mcmc/gibbs" | |
| args: "mcmc/gibbs.jl" | |
| - name: "mcmc/hmc" | |
| args: "mcmc/hmc.jl" | |
| - name: "mcmc/abstractmcmc" | |
| args: "mcmc/abstractmcmc.jl" | |
| - name: "mcmc/Inference" | |
| args: "mcmc/Inference.jl" | |
| - name: "mcmc/ess" | |
| args: "mcmc/ess.jl" | |
| - name: "everything else" | |
| args: "--skip essential/ad.jl mcmc/gibbs.jl mcmc/hmc.jl mcmc/abstractmcmc.jl mcmc/Inference.jl mcmc/ess.jl" | |
| runner: | |
| # Default | |
| - version: '1' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 1 | |
| # x86 | |
| - version: '1' | |
| os: ubuntu-latest | |
| arch: x86 | |
| num_threads: 1 | |
| # Multithreaded | |
| - version: '1' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 2 | |
| # Windows | |
| - version: '1' | |
| os: windows-latest | |
| arch: x64 | |
| num_threads: 1 | |
| # macOS | |
| - version: '1' | |
| os: macos-latest | |
| arch: aarch64 | |
| num_threads: 1 | |
| # Minimum supported Julia version | |
| - version: 'min' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 1 | |
| # Minimum supported Julia version, multithreaded | |
| - version: 'min' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 2 | |
| # Pre-release Julia version | |
| - version: 'pre' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 1 | |
| steps: | |
| - name: Print matrix variables | |
| run: | | |
| echo "OS: ${{ matrix.runner.os }}" | |
| echo "Architecture: ${{ matrix.runner.arch }}" | |
| echo "Julia version: ${{ matrix.runner.version }}" | |
| echo "Number of threads: ${{ matrix.runner.num_threads }}" | |
| echo "Test arguments: ${{ matrix.test.args }}" | |
| - name: (De)activate coverage analysis | |
| run: echo "COVERAGE=${{ matrix.runner.version == '1' && matrix.runner.os == 'ubuntu-latest' && matrix.runner.num_threads == 2 }}" >> "$GITHUB_ENV" | |
| shell: bash | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '${{ matrix.runner.version }}' | |
| arch: ${{ matrix.runner.arch }} | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| # TODO: Use julia-actions/julia-runtest when test_args are supported | |
| # Custom calls of Pkg.test tend to miss features such as e.g. adjustments for CompatHelper PRs | |
| # Ref https://github.com/julia-actions/julia-runtest/pull/73 | |
| - name: Call Pkg.test | |
| run: julia --color=yes --inline=yes --depwarn=yes --check-bounds=yes --threads=${{ matrix.runner.num_threads }} --project=@. -e 'import Pkg; Pkg.test(; coverage=parse(Bool, ENV["COVERAGE"]), test_args=ARGS)' -- ${{ matrix.test.args }} | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| if: ${{ env.COVERAGE }} | |
| - uses: codecov/codecov-action@v4 | |
| if: ${{ env.COVERAGE }} | |
| with: | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: lcov.info | |
| - uses: coverallsapp/github-action@v2 | |
| if: ${{ env.COVERAGE }} | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: lcov.info | |
| flag-name: run-${{ join(matrix.*, '-') }} | |
| parallel: true | |
| finish: | |
| needs: test | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| parallel-finished: true |