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1. metagenome_analyses metagenome_analyses Public

   Using IDBA-ud, this is how we assemble metagenomic reads into scaffolds on different projects

   Python 8 8

2. Methanotroph_rpS3Analyses_SmithWrighton2018 Methanotroph_rpS3Analyses_SmithWrighton2018 Public

   Data and analyses of methanotroph isolates', MAGs', and other metagenomic rpS3 genes performed for the publication by Smith and Wrighton

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3. Protpipeliner Protpipeliner Public

   This script combines MUSCLE, GBLOCKS, Prottest and RaxML for an efficient and streamlined method of building trees.

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4. metagenome_annotation metagenome_annotation Public

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5. Metatranscriptomics Metatranscriptomics Public

   This script takes metatranscriptomic reads, maps them to a fasta file and calculates the FPKM value using cufflinks

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6. 16S-analyses-with-QIIME 16S-analyses-with-QIIME Public

   Python 2