Merge branch 'master' of https://github.com/TerraME/terrame

repository/log/doc-gpm.log

@@ -5,6 +5,10 @@ Processing lua files
 Processing 'cells.lua'
 Checking directory 'data'
 Checking properties of data files
+Processing 'area.gpm'
+Processing 'border.gal'
+Processing 'border.gpm'
+Processing 'border.gwt'
 Processing 'cells.shp'
 Processing 'communities.shp'
 Processing 'farms.shp'

repository/log/doc-logo.log

@@ -7,11 +7,11 @@ Checking properties of data files
 Package has no fonts
 Parsing lua files
 Parsing lua/Ants.lua
+Parsing lua/Disease.lua
 Parsing lua/GrowingSociety.lua
 Parsing lua/Heatbugs.lua
 Parsing lua/Labyrinth.lua
 Parsing lua/LifeCycle.lua
-Parsing lua/LogoAgent.lua
 Parsing lua/Overpopulation.lua
 Parsing lua/PredatorPrey.lua
 Parsing lua/Schelling.lua
@@ -20,15 +20,16 @@ Parsing lua/Sugarscape.lua
 Parsing lua/Utils.lua
 Parsing examples
 Parsing examples/ants.lua
+Parsing examples/disease.lua
 Parsing examples/road.lua
 Checking undocumented files
 Checking @usage definition
 Checking lua/Ants.lua
+Checking lua/Disease.lua
 Checking lua/GrowingSociety.lua
 Checking lua/Heatbugs.lua
 Checking lua/Labyrinth.lua
 Checking lua/LifeCycle.lua
-Checking lua/LogoAgent.lua
 Checking lua/Overpopulation.lua
 Checking lua/PredatorPrey.lua
 Checking lua/Schelling.lua
@@ -37,16 +38,11 @@ Checking lua/Sugarscape.lua
 Checking lua/Utils.lua
 Testing @usage
 Testing file lua/Ants.lua
+Testing file lua/Disease.lua
 Testing file lua/GrowingSociety.lua
 Testing file lua/Heatbugs.lua
 Testing file lua/Labyrinth.lua
 Testing file lua/LifeCycle.lua
-Testing file lua/LogoAgent.lua
-Testing LogoAgent
-Testing breed
-Testing countNeighbors
-Testing emptyNeighbor
-Testing relocate
 Testing file lua/Overpopulation.lua
 Testing file lua/PredatorPrey.lua
 Testing file lua/Schelling.lua
@@ -56,11 +52,11 @@ Testing file lua/Utils.lua
 Testing getLabyrinth
 Checking calls to functions in @usage
 Checking lua/Ants.lua
+Checking lua/Disease.lua
 Checking lua/GrowingSociety.lua
 Checking lua/Heatbugs.lua
 Checking lua/Labyrinth.lua
 Checking lua/LifeCycle.lua
-Checking lua/LogoAgent.lua
 Checking lua/Overpopulation.lua
 Checking lua/PredatorPrey.lua
 Checking lua/Schelling.lua
@@ -69,11 +65,11 @@ Checking lua/Sugarscape.lua
 Checking lua/Utils.lua
 Checking undocumented arguments
 Checking lua/Ants.lua
+Checking lua/Disease.lua
 Checking lua/GrowingSociety.lua
 Checking lua/Heatbugs.lua
 Checking lua/Labyrinth.lua
 Checking lua/LifeCycle.lua
-Checking lua/LogoAgent.lua
 Checking lua/Overpopulation.lua
 Checking lua/PredatorPrey.lua
 Checking lua/Schelling.lua
@@ -83,7 +79,6 @@ Checking lua/Utils.lua
 Checking 'description.lua'
 Building and checking HTML files
 Building doc/index.html
-Building doc/files/LogoAgent.html
 Building doc/files/Utils.html
 Building doc/files/examples.html
 Building doc/files/data.html
@@ -95,11 +90,11 @@ Checking examples
 Checking if all images are used
 Checking if all functions are documented
 Checking Ants.lua
+Checking Disease.lua
 Checking GrowingSociety.lua
 Checking Heatbugs.lua
 Checking Labyrinth.lua
 Checking LifeCycle.lua
-Checking LogoAgent.lua
 Checking Overpopulation.lua
 Checking PredatorPrey.lua
 Checking Schelling.lua
@@ -109,28 +104,28 @@ Checking Utils.lua
 Checking if all Models are documented
 
 Documentation report for package 'logo':
-Documentation was built in 1.19 seconds.
-6 HTML files were created.
+Documentation was built in 0.71 seconds.
+5 HTML files were created.
 All files are documented.
 All fields of 'description.lua' are correct.
 No problems were found in the documentation of data.
 All descriptions end with a correct character.
-All 10 Models are correctly documented.
+All 11 Models are correctly documented.
 All source code lines starting with --- are valid.
-All 6 global functions of the package are documented.
+All 1 global functions of the package are documented.
 All functions of each file are declared only once.
 There is no duplicated tag in the documentation.
 All tags with compulsory arguments were correctly used.
-All 5 non-named arguments are documented.
+All 1 non-named arguments are documented.
 No undefined arguments were found.
 All available arguments of functions are used in their HTML tables.
 All arguments used in the HTML tables are documented.
 All non-deprecated functions have @usage.
-All 6 functions call themselves in their @usage.
-All 6 functions do not have any error in their @usage.
+All 1 functions call themselves in their @usage.
+All 1 functions do not have any error in their @usage.
 All @tabular are correctly described.
 No invalid tags were found in the documentation.
 All images are correctly used.
 All 0 links were correctly built.
-All 2 examples are correctly documented.
+All 3 examples are correctly documented.
 Summing up, all the documentation was successfully built.

repository/log/doc-publish.log

@@ -28,6 +28,7 @@ Parsing lua/Application.lua
 Parsing lua/Color.lua
 Parsing lua/List.lua
 Parsing lua/Report.lua
+Parsing lua/Utils.lua
 Parsing lua/View.lua
 Parsing examples
 Parsing examples/arapiuns.lua
@@ -40,6 +41,7 @@ Checking lua/Application.lua
 Checking lua/Color.lua
 Checking lua/List.lua
 Checking lua/Report.lua
+Checking lua/Utils.lua
 Checking lua/View.lua
 Testing @usage
 Testing file lua/Application.lua
@@ -55,19 +57,23 @@ Testing addImage
 Testing addSeparator
 Testing addText
 Testing get
+Testing file lua/Utils.lua
+Testing link
 Testing file lua/View.lua
 Testing View
 Checking calls to functions in @usage
 Checking lua/Application.lua
 Checking lua/Color.lua
 Checking lua/List.lua
 Checking lua/Report.lua
+Checking lua/Utils.lua
 Checking lua/View.lua
 Checking undocumented arguments
 Checking lua/Application.lua
 Checking lua/Color.lua
 Checking lua/List.lua
 Checking lua/Report.lua
+Checking lua/Utils.lua
 Checking lua/View.lua
 Checking 'description.lua'
 Building and checking HTML files
@@ -76,6 +82,7 @@ Building doc/files/Application.html
 Building doc/files/Color.html
 Building doc/files/List.html
 Building doc/files/Report.html
+Building doc/files/Utils.html
 Building doc/files/View.html
 Building doc/files/examples.html
 Building doc/files/data.html
@@ -88,28 +95,29 @@ Checking Application.lua
 Checking Color.lua
 Checking List.lua
 Checking Report.lua
+Checking Utils.lua
 Checking View.lua
 
 Documentation report for package 'publish':
-Documentation was built in 8.72 seconds.
-8 HTML files were created.
+Documentation was built in 9.15 seconds.
+9 HTML files were created.
 All files are documented.
 All fields of 'description.lua' are correct.
 No problems were found in the documentation of data.
 All projects were successfully processed.
 All descriptions end with a correct character.
 All source code lines starting with --- are valid.
-All 10 global functions of the package are documented.
+All 11 global functions of the package are documented.
 All functions of each file are declared only once.
 There is no duplicated tag in the documentation.
 All tags with compulsory arguments were correctly used.
-All 5 non-named arguments are documented.
+All 7 non-named arguments are documented.
 No undefined arguments were found.
 All available arguments of functions are used in their HTML tables.
 All arguments used in the HTML tables are documented.
 All non-deprecated functions have @usage.
-All 10 functions call themselves in their @usage.
-All 10 functions do not have any error in their @usage.
+All 11 functions call themselves in their @usage.
+All 11 functions do not have any error in their @usage.
 All @tabular are correctly described.
 No invalid tags were found in the documentation.
 All images are correctly used.

repository/log/test-ca.log

@@ -1,4 +1,6 @@
-Using log directory '/Users/pedro/github/terrame/repository/ca/log/'
+Using package's configuration file
+Loading configuration file '/Users/pedro/github/terrame-pedro/repository/ca/config.lua'
+Using log directory '/Users/pedro/github/terrame-pedro/repository/ca/log/'
 Loading package 'ca'
 Looking for overwritten variables
 Looking for documented functions

repository/log/test-calibration.log

@@ -1,3 +1,5 @@
+Using package's configuration file
+Loading configuration file '/Users/pedro/github/terrame-pedro/repository/calibration/config.lua'
 Using log directory '/Users/pedro/github/terrame-pedro/repository/calibration/log/'
 Loading package 'calibration'
 Looking for overwritten variables

repository/log/test-logo.log

@@ -1,3 +1,5 @@
+Using package's configuration file
+Loading configuration file '/Users/pedro/github/terrame-pedro/repository/logo/config.lua'
 Using log directory '/Users/pedro/github/terrame-pedro/repository/logo/log/'
 Loading package 'logo'
 Looking for overwritten variables
@@ -7,6 +9,9 @@ Skip looking for lines of source code
 Testing tests/Ants.lua
 Testing Ants
 Checking if all asserts were executed
+Testing tests/Disease.lua
+Testing Disease
+Checking if all asserts were executed
 Testing tests/GrowingSociety.lua
 Testing GrowingSociety
 Checking if all asserts were executed
@@ -19,13 +24,6 @@ Checking if all asserts were executed
 Testing tests/LifeCycle.lua
 Testing LifeCycle
 Checking if all asserts were executed
-Testing tests/LogoAgent.lua
-Testing LogoAgent
-Testing breed
-Testing countNeighbors
-Testing emptyNeighbor
-Testing relocate
-Checking if all asserts were executed
 Testing tests/Overpopulation.lua
 Testing Overpopulation
 Checking if all asserts were executed
@@ -46,11 +44,11 @@ Testing getLabyrinth
 Checking if all asserts were executed
 Checking if functions from source code were tested
 Checking Ants.lua
+Checking Disease.lua
 Checking GrowingSociety.lua
 Checking Heatbugs.lua
 Checking Labyrinth.lua
 Checking LifeCycle.lua
-Checking LogoAgent.lua
 Checking Overpopulation.lua
 Checking PredatorPrey.lua
 Checking Schelling.lua
@@ -60,26 +58,27 @@ Checking Utils.lua
 Skipping lines of source code check
 Testing examples
 Testing ants
+Testing disease
 Testing road
 Checking logs
 
 Functional test report for package 'logo':
-Tests were executed in 564.17 seconds.
+Tests were executed in 609.68 seconds.
 No print() calls were found when loading the package.
 No variable is overwritten when loading the package.
 There are no invalid files or directories in directory 'tests'.
 All asserts were executed at least once.
-All 49 asserts were executed successfully.
-All 16 tested functions do not have any unexpected execution error.
-All 16 tested functions have at least one assert.
-All 16 tested functions exist in the source code of the package.
+All 46 asserts were executed successfully.
+All 12 tested functions do not have any unexpected execution error.
+All 12 tested functions have at least one assert.
+All 12 tested functions exist in the source code of the package.
 No tested function creates or updates any global variable.
 No function prints any text on the screen.
 No assertError() calls have error messages pointing to internal files.
 No file was created along the tests.
-All 16 functions of the package were tested.
+All 12 functions of the package were tested.
 No lines from the source code were verified.
-All 2 examples were successfully executed.
+All 3 examples were successfully executed.
 No new log file was created.
 All log files were used in the tests.
 Summing up, all tests were successfully executed.

repository/log/test-publish.log

@@ -25,6 +25,9 @@ Testing addHeading
 Testing addImage
 Testing addText
 Checking if all asserts were executed
+Testing tests/functional/alternative/Utils.lua
+Testing link
+Checking if all asserts were executed
 Testing tests/functional/alternative/View.lua
 Testing View
 Checking if all asserts were executed
@@ -49,6 +52,9 @@ Testing addSeparator
 Testing addText
 Testing get
 Checking if all asserts were executed
+Testing tests/functional/basic/Utils.lua
+Testing link
+Checking if all asserts were executed
 Testing tests/functional/basic/View.lua
 Testing View
 Testing __tostring
@@ -76,6 +82,7 @@ Checking Application.lua
 Checking Color.lua
 Checking List.lua
 Checking Report.lua
+Checking Utils.lua
 Checking View.lua
 Skipping lines of source code check
 Testing examples
@@ -86,20 +93,20 @@ Testing emas
 Checking logs
 
 Functional test report for package 'publish':
-Tests were executed in 71.28 seconds.
+Tests were executed in 71.69 seconds.
 No print() calls were found when loading the package.
 No variable is overwritten when loading the package.
 There are no invalid files or directories in directory 'tests'.
 All asserts were executed at least once.
-All 860 asserts were executed successfully.
-All 31 tested functions do not have any unexpected execution error.
-All 31 tested functions have at least one assert.
-All 31 tested functions exist in the source code of the package.
+All 833 asserts were executed successfully.
+All 33 tested functions do not have any unexpected execution error.
+All 33 tested functions have at least one assert.
+All 33 tested functions exist in the source code of the package.
 No tested function creates or updates any global variable.
 No function prints any text on the screen.
 No assertError() calls have error messages pointing to internal files.
 No file was created along the tests.
-All 15 functions of the package were tested.
+All 16 functions of the package were tested.
 No lines from the source code were verified.
 All 4 examples were successfully executed.
 No new log file was created.

repository/log/test-sci.log

@@ -1,3 +1,5 @@
+Using package's configuration file
+Loading configuration file '/Users/pedro/github/terrame-pedro/repository/sci/config.lua'
 Using log directory '/Users/pedro/github/terrame-pedro/repository/sci/log/'
 Loading package 'sci'
 Looking for overwritten variables

repository/log/test-sysdyn.log

@@ -1,3 +1,5 @@
+Using package's configuration file
+Loading configuration file '/Users/pedro/github/terrame-pedro/repository/sysdyn/config.lua'
 Using log directory '/Users/pedro/github/terrame-pedro/repository/sysdyn/log/'
 Loading package 'sysdyn'
 Looking for overwritten variables