Merge pull request #240 from SysBioChalmers/doc/yeast-gem-viz

doc: visualization instructions
SysBioChalmers · Jul 17, 2020 · cd65a6a · cd65a6a
2 parents 0e3253a + 9979fcd
commit cd65a6a
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/README.md b/README.md
@@ -63,6 +63,11 @@ Make sure to load/save the model with the corresponding wrapper functions!
   io.write_yeast_model(model)   # saving
   ```
 
+### Online Visualization/Simulation
+
+* You can visualize selected pathways of yeast-GEM and perform online constraint-based simulations using [Caffeine](https://caffeine.dd-decaf.eu/interactive-map), by creating a simulation with the latest yeast-GEM version available, and choosing any _S. cerevisiae_ map (currently only `iMM904` maps are available). Learn more [about Caffeine](https://caffeine.dd-decaf.eu).
+* Additionally, you can interactively navigate model components and visualize 3D representations of all compartments and subsystems of yeast-GEM at [Metabolic Atlas](https://metabolicatlas.org/explore?selected=Yeast-GEM). Learn more [about Metabolic Atlas](https://www.metabolicatlas.org/about).
+
 ## Model Files
 
 The model is available in `.xml`, `.txt`, `.yml`, `.mat` and `.xlsx` (the last 2 extensions only in `master`). Additionally, the following 2 files are available: