Fruitfly 1.7.0

• Features:
  • update Human-GEM template to ver 1.18.0

Fruitfly 1.6.0

• Features:
  • update ortholog pairs from Alliance of Genomes to ver 6.0.0 (commit 61ffc4e)
  • update Human-GEM template to ver 1.17.0

Fruitfly 1.5.0

• Fixes (commit fa5c2a0):
  • keep using biomass equation from Human-GEM MAR13082
• Features:
  • update Human-GEM template to ver 1.16.0

Fruitfly 1.4.0

• Fixes (commit f3f0789):
  • change IDs conflicting to recent changes made to Human-GEM
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.4.0 (commit 95b977a)
  • update Human-GEM template to ver 1.15.0
• Style (commit d4ac5ab):
  • add gene names to new field geneShortNames, as suggested in #24
• Fixes (commit 6cc7ca0)
  • remove duplicated metabolites reported in #11

Fruitfly 1.3.0

• Fixes (PR 460):
  • fix: correct MAM03882 annotation, as reported in Mouse-GEM #21
• Fixes (PR 429):
  • feat: add Acod1(Irg1) gene and associated reaction, as discussed in Mouse-GEM #20
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.3.0 (commit 8f25271)
  • update Human-GEM template to ver 1.14.0
• Style (commit 5880a75):
  • change human-fruitfly ortholog file from json to tsv, as discussed in Mouse-GEM #15

Fruitfly 1.2.1

• Remove additional annotation information from .mat and .yml model files (PR #8)
  • resolves SysBioChalmers/Mouse-GEM#16
• Sync model with latest version of Human-GEM (now v1.12.0)
  • done automatically by running masterScriptFruitflyGEM script

Fruitfly 1.2.0

• Fixes/Features (commit 098f7e3 , PR 382):
  • resolves issues reported in #5, by manually fixing invalid gene ids
  • change compartment abbreviation from p to x, to sync with changes made in Human-GEM PR 341
  • update ortholog pairs from Alliance of Genomes to ver 5.1.1
• Style (PR #4):
  • add .gitattributes to ensure consistent LF (\n) line endings
  • add citation
  • rename branches: master --> main, devel --> develop

Fruitfly 1.1.0

• Features (commit 25177a7):
  • update GEM generating script by using function updateAnimalGEM and providing annotation files in tsv format
• Style (commit 9008303):
  • apply MA format met/rxn identifiers in alignment with Human-GEM v1.8
• Style (commit d2be716):
  • add metsNoComp column to fruitflySpecificMets

Fruitfly 1.0.0

• Style (PR #1):
  • update README.md according to the spec defined in standard-GEM ver 0.5
• Style (commit 6c35654):
  • update .standard-GEM.md checklist to align with standard-GEM template ver 0.5
• Features (commit 1ca0c15):
  • add code for the GEM reconstruction
• Features (commit 18db45b):
  • upload data files
    • add fruit fly-specific pathways
    • ortholog pairs from Alliance of Genomes ver 3.1.1