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@@ -447,6 +447,8 @@
 
 
 
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         <label class="md-nav__link" for="__nav_3_2_1" id="__nav_3_2_1_label" tabindex="0">
@@ -480,6 +482,20 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="/Tutorials-single/t_cluster/" class="md-nav__link">
+        Clustering space
+      </a>
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         Data integration and batch correction
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         <label class="md-nav__link" for="__nav_3_2_3" id="__nav_3_2_3_label" tabindex="0">
@@ -622,6 +640,20 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="/Tutorials-single/t_traj/" class="md-nav__link">
+        Trajectory Inference with PAGA or Palantir
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diff --git a/Developer_guild/index.html b/Developer_guild/index.html
@@ -209,6 +209,11 @@
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 </li>
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_cluster/">
+        Clustering space
+      </a>
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+<li class="md-nav__item">
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@@ -259,6 +264,11 @@
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 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_traj/">
+        Trajectory Inference with PAGA or Palantir
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diff --git a/Example_dataset/index.html b/Example_dataset/index.html
@@ -208,6 +208,11 @@
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 </li>
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_cluster/">
+        Clustering space
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+<li class="md-nav__item">
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         Data integration and batch correction
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@@ -258,6 +263,11 @@
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 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_traj/">
+        Trajectory Inference with PAGA or Palantir
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diff --git a/Installation_guild/index.html b/Installation_guild/index.html
@@ -325,6 +325,11 @@
       </a>
 </li>
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_cluster/">
+        Clustering space
+      </a>
+</li>
+<li class="md-nav__item">
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         Data integration and batch correction
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@@ -375,6 +380,11 @@
         </label>
 <ul class="md-nav__list" data-md-scrollfix="">
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_traj/">
+        Trajectory Inference with PAGA or Palantir
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diff --git a/Release_notes/index.html b/Release_notes/index.html
@@ -210,6 +210,11 @@
       </a>
 </li>
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_cluster/">
+        Clustering space
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+</li>
+<li class="md-nav__item">
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         Data integration and batch correction
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@@ -260,6 +265,11 @@
         </label>
 <ul class="md-nav__list" data-md-scrollfix="">
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_traj/">
+        Trajectory Inference with PAGA or Palantir
+      </a>
+</li>
+<li class="md-nav__item">
 <a class="md-nav__link" href="../Tutorials-single/t_via/">
         Trajectory Inference with VIA
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@@ -1708,6 +1718,8 @@ <h3 id="single-module_18">single Module:<a class="headerlink" href="#single-modu
 <h3 id="utils-module_5">utils Module:<a class="headerlink" href="#utils-module_5" title="Permanent link">¶</a></h3>
 <ul>
 <li>Introduced <code>plot_pca_variance_ratio</code> for visualizing the ratio of PCA variance.</li>
+<li>Added the <code>cluster</code> and <code>filtered</code> module for clustering the cells</li>
+<li>Integrated <code>MiRA</code> to calculate the LDA topic</li>
 </ul>
 </article>
 </div>

diff --git a/Tutorial/index.html b/Tutorial/index.html
@@ -208,6 +208,11 @@
       </a>
 </li>
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_cluster/">
+        Clustering space
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+</li>
+<li class="md-nav__item">
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         Data integration and batch correction
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@@ -258,6 +263,11 @@
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 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_traj/">
+        Trajectory Inference with PAGA or Palantir
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diff --git a/Tutorials-bulk/index.html b/Tutorials-bulk/index.html
@@ -208,6 +208,11 @@
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 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_cluster/">
+        Clustering space
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+</li>
+<li class="md-nav__item">
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         Data integration and batch correction
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@@ -258,6 +263,11 @@
         </label>
 <ul class="md-nav__list" data-md-scrollfix="">
 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_traj/">
+        Trajectory Inference with PAGA or Palantir
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+</li>
+<li class="md-nav__item">
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diff --git a/Tutorials-bulk/t_bulk_combat/index.html b/Tutorials-bulk/t_bulk_combat/index.html
@@ -243,6 +243,11 @@
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 <li class="md-nav__item">
+<a class="md-nav__link" href="../../Tutorials-single/t_cluster/">
+        Clustering space
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+<li class="md-nav__item">
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@@ -293,6 +298,11 @@
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+<a class="md-nav__link" href="../../Tutorials-single/t_traj/">
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diff --git a/Tutorials-bulk/t_deg/index.html b/Tutorials-bulk/t_deg/index.html
@@ -248,6 +248,11 @@
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+<a class="md-nav__link" href="../../Tutorials-single/t_cluster/">
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+<a class="md-nav__link" href="../../Tutorials-single/t_traj/">
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diff --git a/Tutorials-bulk/t_deseq2/index.html b/Tutorials-bulk/t_deseq2/index.html
@@ -243,6 +243,11 @@
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+<a class="md-nav__link" href="../../Tutorials-single/t_cluster/">
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@@ -293,6 +298,11 @@
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+<a class="md-nav__link" href="../../Tutorials-single/t_traj/">
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diff --git a/Tutorials-bulk/t_network/index.html b/Tutorials-bulk/t_network/index.html
@@ -238,6 +238,11 @@
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+<a class="md-nav__link" href="../../Tutorials-single/t_cluster/">
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+<a class="md-nav__link" href="../../Tutorials-single/t_traj/">
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diff --git a/Tutorials-bulk/t_tcga/index.html b/Tutorials-bulk/t_tcga/index.html
@@ -238,6 +238,11 @@
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+<a class="md-nav__link" href="../../Tutorials-single/t_cluster/">
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+<a class="md-nav__link" href="../../Tutorials-single/t_traj/">
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diff --git a/Tutorials-bulk/t_wgcna/index.html b/Tutorials-bulk/t_wgcna/index.html
@@ -248,6 +248,11 @@
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         Data integration and batch correction
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 <li class="md-nav__item">
+<a class="md-nav__link" href="../../Tutorials-single/t_traj/">
+        Trajectory Inference with PAGA or Palantir
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@@ -208,6 +208,11 @@
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 <li class="md-nav__item">
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+        Clustering space
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+<li class="md-nav__item">
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         Data integration and batch correction
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 <li class="md-nav__item">
+<a class="md-nav__link" href="../Tutorials-single/t_traj/">
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