Merge pull request #36 from DBinary/master

update the tutorials of tosica
Starlitnightly · Nov 30, 2023 · 934f89c · 934f89c
2 parents 0a3e92e + 686606d
commit 934f89c
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/omicverse_guide/docs/Tutorials-single/t_tosica.ipynb b/omicverse_guide/docs/Tutorials-single/t_tosica.ipynb
@@ -15,6 +15,8 @@
     "\n",
     "Code: https://github.com/JackieHanLab/TOSICA\n",
     "\n",
+    "Colab_Reproducibility：https://colab.research.google.com/drive/1BjPEG-kLAgicP8iQvtVtpzzbIOmk1X23?usp=sharing\n",
+    "\n",
     "![tosica](https://raw.githubusercontent.com/JackieHanLab/TOSICA/main/figure.png)\n"
    ]
   },
@@ -489,7 +491,7 @@
    ],
    "source": [
     "ov.pp.scale(query_adata)\n",
-    "query_adata=ov.pp.pca(query_adata,layer='scaled',n_pcs=50)\n",
+    "ov.pp.pca(query_adata,layer='scaled',n_pcs=50)\n",
     "sc.pp.neighbors(query_adata, n_neighbors=15, n_pcs=50,\n",
     "               use_rep='scaled|original|X_pca')\n",
     "query_adata.obsm[\"X_mde\"] = ov.utils.mde(query_adata.obsm[\"scaled|original|X_pca\"])\n",