updated the tutorials of scMulan. #263
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
name: py38|py39 | |
on: | |
push: | |
branches: [ "master" ] | |
pull_request: | |
branches: [ "master" ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.8", "3.9"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install flake8 pytest torch tensorboard scrublet mellon torch_geometric | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors | |
flake8 . --count --select=E9,F63,F7 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Test with pytest | |
run: | | |
pytest |