v0.13.0

SpeedyWeather v0.13.0

Diff since v0.12.1

Merged pull requests:

• SpeedyTransforms: Differentiable transforms via custom Enzyme rule (#589) (@maximilian-gelbrecht)
• CompatHelper: bump compat for GPUArrays to 11 and JLArrays to 0.2, (keep existing compat) (#590) (@github-actions[bot])
• Rossby-Haurwitz wave initial conditions for eta (#604) (@rivwgk)
• Optical depth parameterization + array-agnostic ColumnVariables (#606) (@milankl)
• large-scale condensation at <100% (#609) (@minqi6)
• Slab ocean and net surface and top-of-atmosphere fluxes (#613) (@milankl)
• Include large-scale condensation tests (#615) (@milankl)
• Power spectrum for n-dimensional LowerTriangularArray (#618) (@milankl)
• CompatHelper: add new compat entry for FiniteDifferences in [weakdeps] at version 0.12, (keep existing compat) (#620) (@github-actions[bot])
• CompatHelper: add new compat entry for Enzyme in [weakdeps] at version 0.13, (keep existing compat) (#622) (@github-actions[bot])
• One band longwave radiation implemented (#624) (@milankl)
• [SpeedyTransforms] Restrict finite difference tests to one grid only (#625) (@maximilian-gelbrecht)
• [SpeedyTransforms] Exclude second differentiation identity test for OctahedralGrid (#627) (@maximilian-gelbrecht)
• Introduce separate extended tests in CI (#628) (@maximilian-gelbrecht)
• AbstractStochasticPhysics and SPPT (#629) (@milankl)
• AbstractSurfacePerturbation (#631) (@milankl)
• bump to v0.13 (#632) (@milankl)

Closed issues:

• Driven by reanalysis data (#576)
• Stability Issues with Multiple Weather Trajectories Generation (#607)

v0.12.1

SpeedyWeather v0.12.1

Diff since v0.12.0

Merged pull requests:

• GeoMakie extension and interactive 3D grid visualisation on the sphere (#600) (@milankl)
• Array-agnostic horizontal diffusion, +modularised (#601) (@milankl)
• Define zonal_mean for any AbstractGridArray (#603) (@milankl)
• Update README.md with dataviz (#608) (@milankl)
• set! for boundary conditions (#611) (@milankl)
• ConstantLandTemperature implemented (#612) (@milankl)

Closed issues:

• Spectral filtering instead of hyperdiffusion (#547)
• Interactive 3D data visualisation directly on the grid (#599)

v0.12.0

SpeedyWeather v0.12.0

Diff since v0.11.0

Merged pull requests:

• Feedback.verbose coupled to isinteractive() (#582) (@milankl)
• Array-agnostic SpectralTransform (#583) (@milankl)
• Stop supporting Julia 1.9 (#585) (@milankl)
• Move CUDA to extension (#586) (@milankl)
• Do not interweave transform (#587) (@milankl)
• Add Haversine and general spherical_distance and AbstractSphericalDistance functionality (#588) (@treigerm)
• Rossby-Haurwitz wave initial conditions +docs (#591) (@milankl)
• SpectralAR1Process and AbstractRandomProcess (#592) (@milankl)
• Model constructors with positional SpectralGrid argument (#593) (@milankl)
• Introduce OctaminimalGaussianArray; smaller, faster but less accurate (#595) (@milankl)
• NetCDF output: Precipitation accumulated and rate (#596) (@milankl)
• Bump to v0.12 (#597) (@milankl)

Closed issues:

• Performance of the spectral transform (#32)
• Set! discontinuous across prime meridian (#584)

v0.11.0

SpeedyWeather v0.11.0

Diff since v0.10.0

Merged pull requests:

• Restructured dynamical core, variables array-agnostic and 3-dimensional, modular netCDF output (#525) (@milankl)
• Change LowerTriangularArrays to be subtype of AbstractArray{T,N-1} (#543) (@maximilian-gelbrecht)
• JOSS paper citation (#548) (@navidcy)
• Bump actions/upload-artifact from 1 to 4 (#550) (@dependabot[bot])
• Bump actions/checkout from 3 to 4 (#551) (@dependabot[bot])
• Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#552) (@dependabot[bot])
• All parameterizations at prev timestep, flux limiters removed (#555) (@milankl)
• Create CHANGELOG.md (#559) (@milankl)
• LTA: copyto! for Vectors (#561) (@maximilian-gelbrecht)
• LTA: colon indexing for LTM (#562) (@maximilian-gelbrecht)
• Set! function for PrognosticVariables and ICs for new structure (#563) (@maximilian-gelbrecht)
• New 4D Variable Structure: nlayers instead of nlev; starting to adjust docs (#566) (@maximilian-gelbrecht)
• Fix RingGrid broadcast issue with mismatching dimensions (#568) (@maximilian-gelbrecht)
• RingGrids: Fix RingGrids Array conversion (#572) (@maximilian-gelbrecht)
• NetCDF output modularised (#573) (@milankl)
• CompatHelper: bump compat for JLD2 to 0.5, (keep existing compat) (#574) (@github-actions[bot])
• Benchmarks for individual dynamics functions (#577) (@maximilian-gelbrecht)
• set! for orography (#578) (@milankl)
• Set! documentation / keywords (#580) (@maximilian-gelbrecht)

Closed issues:

• Example GPU kernels (#121)
• Modularise netCDF output (#522)
• Instability develops over long integrations (#553)
• RingGrids: Conflicting Broadcast Rules (#565)
• RingGrids: N-dim Matrix/Array constructors (#570)

v0.10.0

SpeedyWeather v0.10.0

Diff since v0.9.0

Merged pull requests:

• JOSS paper (#387) (@milankl)
• Scheduler for callbacks (#488) (@milankl)
• Zenodo DOI added (#489) (@milankl)
• Schedule bug with millisecond time steps (#490) (@milankl)
• Update README.md with particle advection video (#491) (@milankl)
• Field trees (#492) (@milankl)
• Export coriolis, unscale diagnostics at finish, add! callbacks directly to model too (#494) (@milankl)
• Trees with summarysize (#495) (@milankl)
• ConstantOceanClimatology, AquaPlanet (#496) (@milankl)
• Document typical online analysis steps (#497) (@milankl)
• Convection with work arrays for thread safety (#498) (@milankl)
• Bulk Richardson-based vertical diffusion (#499) (@milankl)
• LowerTriangularMatrix copyto! range bug (#501) (@milankl)
• Jeevanjee longwave radiation (#502) (@milankl)
• LowerTriangularMatrices: N-dimensional and GPU ready (#503) (@maximilian-gelbrecht)
• Add to analysis doc (from new branch) (#505) (@milankl)
• Broadcasting for RingGrids (#506) (@milankl)
• Benchmark overview (#509) (@milankl)
• Large-scale condensation documented (#510) (@milankl)
• Add Makie extension (#511) (@milankl)
• Convection documentation (#512) (@milankl)
• Radiation documentation (#513) (@milankl)
• Held-Suarez example, NoTypes for surface fluxes (#514) (@milankl)
• Bump julia-actions/setup-julia from 1 to 2 (#516) (@dependabot[bot])
• Remove PythonPlot dependency of docs (#517) (@milankl)
• Model construction without type constraints (#519) (@milankl)
• AbstractGridArray N-dimensional and GPU ready (#520) (@milankl)
• Exports more gradient operators from SpeedyTransforms (#523) (@milankl)
• Change weight in ZonalJet() (#524) (@miniufo)
• Orography documented (#526) (@milankl)
• Particle advection time stepping corrected (#528) (@milankl)
• Humidity video for readme (#529) (@milankl)
• Surface flux documentation (#530) (@milankl)
• Add explicit arithmetics again to LowerTriangularArrays (#531) (@maximilian-gelbrecht)
• Vertical diffusion documentation (#532) (@milankl)
• Ocean model documentation (#533) (@milankl)
• Parameterization structure documented (#534) (@milankl)
• Bump Makie compat (#535) (@asinghvi17)
• Docs clarification: Parameterization for primitive models only (#536) (@milankl)
• Restructure docs following #443 (#537) (@milankl)
• Scale orography and smooth fraction of resolved wavenumbers (#538) (@milankl)
• StochasticStirring example with CairoMakie (#539) (@milankl)
• Horizontal diffusion not adaptive (#540) (@milankl)
• Large-scale condensation at previous time step (#541) (@milankl)
• Surface fluxes calculated from previous time step (#542) (@milankl)
• bump to v0.10 (#545) (@milankl)

Closed issues:

• Physical parameterizations: inconsistencies between speedy.f90 and the Speedy Documentation (#126)
• Progress towards primitive equations (#192)
• Divergence of (hu, hv, h) (#372)
• Initial conditions from PDEArena (#377)
• Conserved quantity verifying (#400)
• shallow-water case for a global ocean (#412)
• [JOSS review] Nat's Review of SpeedyWeather.jl (#443)
• [JOSS Review] questions + suggestions (#446)
• [JOSS review] Zenodo archival (#448)
• Another simple radiation scheme (#456)
• Automatic performance testing (#464)
• JOSS review: text comments (#480)
• Replace PythonPlot with a Julia-based plotting library in Docs (#482)
• Verifying conserved quantities (#500)
• PrimitiveDry and WetModel generation on Julia v1.9 hangs (#508)
• The PrimitiveWetModel example fails (#515)
• unbalanced initial condition for Galewsky Jet (#518)
• Time stepping of particle tracking (#527)

v0.9.0

SpeedyWeather v0.9.0

Diff since v0.8.0

Merged pull requests:

• Solar zenith angle calculation (#438) (@milankl)
• ImmediateCondensation and Clausius-Clapeyron (#439) (@milankl)
• Flux limiters for surface drag and heat fluxes (#440) (@milankl)
• Bulk Richardson number-based boundary layer drag (#441) (@milankl)
• Simplified BettsMiller convection (#442) (@milankl)
• Simple radiation schemes: UniformCooling, TransparentShortwave (#444) (@milankl)
• ImplicitCondensation not immediate anymore (#447) (@milankl)
• AquaPlanetMask (#450) (@milankl)
• Use Documenter.@docs functionality to display docstring in Documentation (#451) (@navidcy)
• Run LowerTriangularMatrix and output examples while building the docs (#453) (@navidcy)
• Some more examples running live in the Docs (#454) (@navidcy)
• Callbacks (#455) (@milankl)
• Restructuring the docs (#457) (@milankl)
• Collapse levels to streamline the documentation navigation (#458) (@natgeo-wong)
• Parametric models, non-parametric abstract types, remove DynamicsConstants, Dict of callbacks (#459) (@milankl)
• Particle advection in 2D, all models (#465) (@milankl)
• Dry Betts-Miller convection (#467) (@milankl)
• Add dependabot (#468) (@milankl)
• Initial conditions modular for variables (#469) (@milankl)
• Remove DEFAULT_NF generators of Earth and EarthAtmosphere (#470) (@milankl)
• Bump actions/cache from 3 to 4 (#471) (@dependabot[bot])
• Bump actions/checkout from 3 to 4 (#472) (@dependabot[bot])
• Add space after comma (#473) (@navidcy)
• Change arg name for isincreasing/isdecreasing to agree w docstring (#474) (@navidcy)
• Fix the Docs/SpeedyTransforms/Geostrophy example + make it run live by doc built (#475) (@navidcy)
• Remove testing for 1.8 and 1.9 temporarily (#476) (@milankl)
• Add space after semicolon (#477) (@navidcy)
• Delete deprecated doc instructions (#479) (@navidcy)
• Add @ids for model pages + add links to models pages in Docs landing page (#481) (@navidcy)
• ParticleTracker with netCDF (#484) (@milankl)
• rand(Particle) cos-distribution corrected (#485) (@milankl)
• Update README.md (#486) (@milankl)
• Bump to v0.9 (#487) (@milankl)

Closed issues:

• online particle tracking (#413)
• Convection too weak?! (#436)
• Condensation fireworks (#445)
• [JOSS Review] firstnames vs. initials in .bib file (#449)
• Question about example in Docs/SpeedyTransforms/Geostrophy (#452)
• Precompilation Error (#466)

v0.8.0

SpeedyWeather v0.8.0

Diff since v0.7.1

Merged pull requests:

• Make prognostics available for forcing, drag in Barotropic/SWM (#423) (@milankl)
• Stochastic stirring video (#424) (@milankl)
• Add random wave video (#425) (@milankl)
• Export forcing!, drag!, etc for extending those with fewer conflicts (#426) (@milankl)
• CompatHelper: bump compat for Adapt to 4, (keep existing compat) (#427) (@milankl)
• Use Julia v1.10 for CI and building Docs (#428) (@navidcy)
• Add compat entry for NCDatasets v0.14 (#429) (@navidcy)
• Adjust time step with radius (#430) (@milankl)
• Add remark about Julia compat (#431) (@navidcy)
• Switch off dynamics (#432) (@milankl)
• Vertical diffusion of humidity (#433) (@milankl)
• NoBoundaryLayer but TemperatureRelaxation default for dry & wet models (#435) (@milankl)
• bump to v0.8 (#437) (@milankl)

Closed issues:

• Literated example with the animation that is currently in README? (#297)
• Global shallow-water run (#323)
• Hybrid vertical coordinates (#329)
• What constitutes the 'state' of the model at a particular timestep (#347)
• SpeedyWeather's logic and information flow (#350)
• Zanna & Bolton eddy parameterization (#402)

v0.7.1

SpeedyWeather v0.7.1

Diff since v0.7.0

Merged pull requests:

• Period Keyword Argument instead of n_days (#420) (@maximilian-gelbrecht)
• JOSS badge added (#421) (@milankl)
• bump to v0.7.1 (#422) (@milankl)

Closed issues:

• Given user-facing parameters that represent a time period actually units (#417)

v0.7.0

SpeedyWeather v0.7.0

Diff since v0.6.0

Merged pull requests:

• Forcing and drag for the ShallowWaterModel (#376) (@milankl)
• eta/pres was not output (#378) (@milankl)
• RandomWaves initial conditions (#379) (@milankl)
• scale_coslat funcs without Geometry, moved to RingGrids (#381) (@milankl)
• Set lmax+1 row to zero in divergence!, curl! (#383) (@milankl)
• Output via NCDatasets.jl, remove NetCDF.jl deps (#384) (@milankl)
• Pretty printing for structs (#385) (@milankl)
• Model setups documented (#386) (@milankl)
• Land-sea mask (#389) (@milankl)
• Bug: First NetCDF time step is always 2000-01-01 (#390) (@milankl)
• Coriolis and div,curl,laplace convience functions (#392) (@milankl)
• Accumulate vor/div tendencies (#393) (@milankl)
• Ocean/Land for prognostic variables added (#395) (@milankl)
• CompatHelper: bump compat for CUDA to 5, (keep existing compat) (#396) (@milankl)
• Documentation: Extending SpeedyWeather.jl (#397) (@milankl)
• CompatHelper: bump compat for FastGaussQuadrature to 1, (keep existin… (#398) (@milankl)
• Surface fluxes of heat, moisture and momentum: Land and ocean seasonal climatology (#399) (@milankl)
• CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat) (#401) (@milankl)
• Soil moisture and vegetation (#403) (@milankl)
• Overhauled initial conditions for humidity (#404) (@milankl)
• Output cloud top [Pa], condensation simplified (#405) (@milankl)
• NetCDF output with BFloat16 (#407) (@milankl)
• plot(::LowerTriangularMatrix) (#408) (@milankl)
• Simplify default vertical coordinate spacing to equi-distant with sigma (#409) (@milankl)
• Convection (#414) (@milankl)
• Fix load_trajectory (#415) (@maximilian-gelbrecht)
• Output_dt in leapfrog time stepping and some adjustments for using Dates (#418) (@maximilian-gelbrecht)
• Bump to v0.7 (#419) (@milankl)

Closed issues:

• References for the dynamical core (#45)
• Use logging infrastructure for feedback messages (#68)
• Number format-flexibility (#137)
• Forcing and climatology in the shallow water system (#151)
• Liniting (#220)
• 16 bit model (#375)
• divergence! should set last row to zero (#382)
• plotting error with Float32sr spectralgrid! (#388)
• Shallow water run (#391)
• Barotropic vorticity model: Stochastic stirring (#394)
• run BarotropicModel T21 with BFloat16 and output (#406)
• low precision stochastic rounding (#411)
• Output time axis: option to adhere to output_dt exactly (#416)

v0.6.0

SpeedyWeather v0.6.0

Diff since v0.5.0

Closed issues:

• 16-bit FFT (#31)
• Expanding the Documentation (#263)
• Cannot run example on non-GPU system (#282)
• Windows permssions problem (#285)
• Precompilation warnings? (#296)
• Away from monolithic run_speedy()? (#320)
• CI runs on latest Julia release -- should we add more? (#325)
• Query about computational resources (#342)
• CI test on supported Julia versions? (#359)
• Precompilation errors of IrrationalConstants dependency (#366)
• SpectralGrid not defined in v0.5 (#367)

Merged pull requests:

• New SpectralGrid, Model, initialize!, simulation, run! structure (#327) (@milankl)
• Add clarification for SWE variables (#332) (@navidcy)
• Update README.md (#333) (@milankl)
• RingGrids and LowerTriangularMatrices docs (#335) (@milankl)
• remove Model from SpectralGrid (#336) (@milankl)
• Update README.md (#337) (@milankl)
• SpeedyCondensation implemented (#338) (@milankl)
• Update README.md (#339) (@milankl)
• NetCDF output documented (#340) (@milankl)
• Barotropic vorticity equation algorithm described (#341) (@milankl)
• barotropic, shallowwater test cases (#343) (@milankl)
• absolute paths docs img (#344) (@milankl)
• Run examples and produce output with every Docs built (#345) (@navidcy)
• Plot ::AbstractGrid as Unicode heatmap (#346) (@milankl)
• Barotropic, shallow water, and some primitive model documentation (#348) (@milankl)
• Update README.md with logo (#349) (@milankl)
• Fix typos in docs (#351) (@pitmonticone)
• Fix typos in mk/docs (#352) (@pitmonticone)
• Move clock to prognostic variables (#353) (@milankl)
• plot small grids without spaces (#354) (@milankl)
• Non-adaptive implicit: temp_profile in implicit only (#355) (@milankl)
• SpectralTransform for square LowerTriMats too (#356) (@milankl)
• CompatHelper: bump compat for KernelAbstractions to 0.9, (keep existi… (#357) (@milankl)
• Support KernelAbstractions 0.9 (#358) (@vchuravy)
• Other video for primitive (#360) (@milankl)
• CI tests on Julia 1.8, 1.9 + test on Julia nightly every week (#361) (@milankl)
• Different vertical advection schemes (#362) (@simone-silvestri)
• SpeedyTransforms documentation (#363) (@milankl)
• Increase test tolerance (#364) (@milankl)
• Primitive equation documentation (#365) (@milankl)
• Bugfix in vertical advection (#368) (@simone-silvestri)
• Speedstring precompilation warning (#369) (@milankl)
• Full and octahedral Gaussian grid documented (#371) (@milankl)
• get_truncation(::AbstractGrid) (#373) (@milankl)
• bump to v0.6 (#374) (@milankl)