Merge pull request #335 from SciML/ChrisRackauckas-patch-1

Version bumps

Project.toml

@@ -36,26 +36,26 @@ DiffEqBase = "6.36"
 DiffResults = "1.0"
 Distances = "0.10"
 Distributions = "0.25"
-DocStringExtensions = "0.8, 0.9"
-DynamicHMC = "2.1, 3"
+DocStringExtensions = "0.9"
+DynamicHMC = "3"
 ForwardDiff = "0.10"
 LabelledArrays = "1.0"
 LogDensityProblemsAD = "1"
 MacroTools = "0.5"
-Missings = "0.4, 1.0"
-ModelingToolkit = "8"
+Missings = "1.0"
+ModelingToolkit = "9"
 Optim = "1.0"
 PDMats = "0.11"
 Parameters = "0.12"
-RecursiveArrayTools = "1,2, 3"
+RecursiveArrayTools = "3"
 Reexport = "1.0"
 Requires = "1.0"
 StanSample = "6, 7"
 StructArrays = "0.6"
 TransformVariables = "0.8"
 TransformedLogDensities = "1"
-Turing = "0.25, 0.26, 0.27, 0.28, 0.30, 0.35"
-julia = "1.7"
+Turing = "0.35"
+julia = "1.10"
 
 [extras]
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"

src/stan_inference.jl

@@ -199,7 +199,7 @@ function stan_inference(
 
         if isnothing(diffeq_string)
             diffeq_string = ModelingToolkit.build_function(ModelingToolkit.equations(sys),
-                ModelingToolkit.states(sys),
+                ModelingToolkit.unknowns(sys),
                 ModelingToolkit.parameters(sys),
                 ModelingToolkit.get_iv(sys);
                 expression = Val{true},
@@ -250,4 +250,4 @@ function stan_inference(
     else
         rc.err
     end
-end
+end