Merge pull request #36 from SciML/aj/mtk

create_param using mtk metadata

Project.toml

@@ -1,7 +1,7 @@
 name = "CellMLToolkit"
 uuid = "03cb29e0-1ef4-4721-aa24-cf58a006576f"
 authors = ["Shahriar Iravanian <[email protected]>"]
-version = "2.3.0"
+version = "2.3.1"
 
 [deps]
 EzXML = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615"
@@ -16,7 +16,7 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 [compat]
 EzXML = "1.1"
 HTTP = "0.9"
-MathML = "0.1.5"
+MathML = "0.1"
 Memoize = "0.4"
 ModelingToolkit = "5.14"
 OrdinaryDiffEq = "5.52"

src/components.jl

@@ -4,7 +4,11 @@ const mathml_ns = "http://www.w3.org/1998/Math/MathML"
 
 create_var(x) = Num(Variable(Symbol(x))).val
 create_var(x, iv) = Num(Variable{Symbolics.FnType{Tuple{Any},Real}}(Symbol(x)))(iv).val
-create_param(x) = Num(Sym{ModelingToolkit.Parameter{Real}}(Symbol(x))).val
+function create_param(x)
+  p = Sym{Real}(Symbol(x))
+  ModelingToolkit.toparam(p)
+  p
+end
 
 to_symbol(x::Symbol) = x
 to_symbol(x::AbstractString) = Symbol(x)
@@ -157,7 +161,7 @@ function translate_connections(doc::Document, systems, class)
         sys2 = systems[c2]
         for w in variables_of.(list_connection_variables(k))
             v1, v2 = Symbol.(w)
-            if class[make_var(c1,v1)] && class[make_var(c2,v2)] && Symbol(sys1.iv) != v1
+            if class[make_var(c1,v1)] && class[make_var(c2,v2)]
                 var1 = getproperty(sys1, v1)
                 var2 = getproperty(sys2, v2)
                 push!(a, var1 ~ var2)
@@ -181,7 +185,7 @@ function pre_substitution(doc::Document, comp, class)
     vars = to_symbol.(list_component_variables(comp))
 
     states = [create_var(x) => create_var(x, ivₚ) for x in vars if class[make_var(comp,x)]]
-    params = [create_var(x) => create_param(x) for x in vars if !class[make_var(comp,x)] && x != ivₘ]
+    params = [create_var(x) => create_param(x) for x in vars if !class[make_var(comp,x)] && !isequal(x, ivₘ)]
     ivsub =  [create_var(ivₘ) => ivₚ]
 
     return states ∪ params ∪ ivsub
@@ -287,7 +291,7 @@ function process_component(doc::Document, comp, class)
     end
 
     ivₚ = get_ivₚ(doc)
-    ps = [last(x) for x in values(pre_sub) if last(x) isa Sym && last(x) != ivₚ]
+    ps = [last(x) for x in values(pre_sub) if last(x) isa Sym && !isequal(last(x), ivₚ)]
     states = [last(x) for x in values(pre_sub) if !(last(x) isa Sym)]
 
     ODESystem(eqs, ivₚ, states, ps; name=to_symbol(comp))