Add V21-11 month averaged fields datasets

datasets.yaml

@@ -39,6 +39,12 @@ datasets:
   - ssc-nemo-202111/ubcSSg3DChemistryFields1hV21-11.xml
   - ssc-nemo-202111/ubcSSgSeaSurfaceCO2FluxField1hV21-11.xml
   - ssc-nemo-202111/ubcSSg3DVariableVolumeLayers1hV21-11.xml
+  # month-averaged fields
+  - ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml
+  - ssc-nemo-202111/month-average/ubcSSg3DPhysicsFields1moV21-11.xml
+  - ssc-nemo-202111/month-average/ubcSSg3DBiologyFields1moV21-11.xml
+  - ssc-nemo-202111/month-average/ubcSSg3DLightFields1moV21-11.xml
+
   # SalishSeaCast NEMO v2019-05 results
   # hour-averaged fields
   - ssc-nemo-201905/ubcSSg3DuGridFields1hV19-05.xml

datasets/ssc-nemo-201905/month-average/ubcSSg3DBiologyFields1moV19-05.xml

@@ -14,7 +14,6 @@
         <att name="title">biogeochemical variables</att>
     </sourceAttributes -->
   <addAttributes>
-    <att name="testOutOfDate">now-36days</att>
     <att name="cdm_data_type">Grid</att>
     <att name="Conventions">CF-1.6, COARDS, ACDD-1.3</att>
     <att name="infoUrl">https://salishsea.eos.ubc.ca/</att>

datasets/ssc-nemo-201905/month-average/ubcSSg3DTracerFields1moV19-05.xml

@@ -14,7 +14,6 @@
         <att name="title">ocean T grid variables</att>
     </sourceAttributes -->
   <addAttributes>
-    <att name="testOutOfDate">now-36days</att>
     <att name="cdm_data_type">Grid</att>
     <att name="Conventions">CF-1.6, COARDS, ACDD-1.3</att>
     <att name="infoUrl">https://salishsea.eos.ubc.ca/</att>

datasets/ssc-nemo-201905/month-average/ubcSSg3DuGridFields1moV19-05.xml

@@ -14,7 +14,6 @@
         <att name="title">ocean U grid variables</att>
     </sourceAttributes -->
   <addAttributes>
-    <att name="testOutOfDate">now-36days</att>
     <att name="cdm_data_type">Grid</att>
     <att name="Conventions">CF-1.6, COARDS, ACDD-1.3</att>
     <att name="infoUrl">https://salishsea.eos.ubc.ca/</att>

datasets/ssc-nemo-201905/month-average/ubcSSg3DvGridFields1moV19-05.xml

@@ -14,7 +14,6 @@
         <att name="title">ocean V grid variables</att>
     </sourceAttributes -->
   <addAttributes>
-    <att name="testOutOfDate">now-36days</att>
     <att name="cdm_data_type">Grid</att>
     <att name="Conventions">CF-1.6, COARDS, ACDD-1.3</att>
     <att name="infoUrl">https://salishsea.eos.ubc.ca/</att>

datasets/ssc-nemo-201905/month-average/ubcSSg3DwGridFields1moV19-05.xml

@@ -14,7 +14,6 @@
         <att name="title">ocean W grid variables</att>
     </sourceAttributes -->
   <addAttributes>
-    <att name="testOutOfDate">now-36days</att>
     <att name="cdm_data_type">Grid</att>
     <att name="Conventions">CF-1.6, COARDS, ACDD-1.3</att>
     <att name="infoUrl">https://salishsea.eos.ubc.ca/</att>

datasets/ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml

@@ -0,0 +1,237 @@
+<dataset type="EDDGridFromNcFiles" datasetID="ubcSSg3DChemistryFields1moV21-11" active="true">
+  <reloadEveryNMinutes>10080</reloadEveryNMinutes>
+  <updateEveryNMillis>10000</updateEveryNMillis>
+  <fileDir>/results2/SalishSea/month-avg.202111/</fileDir>
+  <recursive>true</recursive>
+  <fileNameRegex>.*SalishSeaCast_1m_chem_T_\d{8}_\d{8}\.nc$</fileNameRegex>
+  <metadataFrom>last</metadataFrom>
+  <matchAxisNDigits>20</matchAxisNDigits>
+  <fileTableInMemory>false</fileTableInMemory>
+  <accessibleViaFiles>false</accessibleViaFiles>
+  <!-- sourceAttributes>
+        <att name="Conventions">CF-1.6</att>
+        <att name="description">ocean T grid variables</att>
+        <att name="title">ocean T grid variables</att>
+    </sourceAttributes -->
+  <addAttributes>
+    <att name="testOutOfDate">now-36days</att>
+    <att name="cdm_data_type">Grid</att>
+    <att name="Conventions">CF-1.6, COARDS, ACDD-1.3</att>
+    <att name="infoUrl">https://salishsea.eos.ubc.ca/</att>
+    <att name="institution">UBC EOAS</att>
+    <att name="institution_fullname">Earth, Ocean &amp; Atmospheric Sciences, University of British Columbia</att>
+    <att name="keywords">
+alkalinity,
+carbon, chemistry, concentration, depth, dissolved, dissolved_inorganic_carbon, dissolved_oxygen,
+Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Alkalinity,
+Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Carbon,
+Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Inorganic Carbon,
+Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Oxygen,
+mole_concentration_of_dissolved_inorganic_carbon_in_sea_water,
+mole_concentration_of_dissolved_molecular_oxygen_in_sea_water,
+O2, ocean, oceans, oxygen,
+sea, sea_water_alkalinity_expressed_as_mole_equivalent,
+seawater, time, total_alkalinity, water
+    </att>
+    <att name="license">The SalishSeaCast NEMO model results are copyright
+by the SalishSeaCast Project Contributors and The University of British Columbia.
+
+They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0</att>
+    <att name="standard_name_vocabulary">CF Standard Name Table v29</att>
+    <att name="summary">Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11
+
+3d dissolved inorganic carbon, dissolved oxygen, and total alkalinity field values averaged over
+1 month intervals from SalishSeaCast NEMO model runs with physics, biology and chemistry.
+The values are calculated for the entire model grid that includes the Juan de Fuca Strait,
+the Strait of Georgia, Puget Sound, and Johnstone Strait on the coasts of Washington State and British Columbia.
+The time values are UTC.
+They are the centre of the intervals over which the calculated model results are averaged;
+e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z.
+Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset.
+
+v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry;
+        see infoUrl link for full details.
+        Dissolved inorganic carbon, dissolved oxygen, and total alkalinity variables.
+    </att>
+    <att name="title">Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11</att>
+    <att name="project">SalishSeaCast NEMO Model</att>
+    <att name="creator_name">SalishSeaCast Project Contributors</att>
+    <att name="creator_email">[email protected]</att>
+    <att name="creator_url">https://salishsea-meopar-docs.readthedocs.io/</att>
+    <att name="acknowledgement">MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada</att>
+    <att name="comment">If you use this dataset in your research,
+please reference it with wording similar to the example below,
+and include citations of the publications below.
+Inclusion of the date(s) when you downloaded the dataset,
+and the dataset id help to ensure reproducibility of your work.
+
+Example wording:
+
+3d SKOG carbon chemistry and oxygen fields from the SalishSeaCast NEMO model
+(Soontiens et al, 2016; Soontiens and Allen, 2017, Jarníková et al, 2022)
+were downloaded from their ERDDAP server
+(https://salishsea.eos.ubc.ca/erddap/)
+on DATE from dataset ubcSSg3DChemistryFields1moV21-11.
+
+Citations:
+
+Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016.
+Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21.
+https://dx.doi.org/10.1080/07055900.2015.1108899
+
+Soontiens, N. and Allen, S., 2017.
+Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32.
+https://dx.doi.org/10.1016/j.ocemod.2017.02.008
+
+Jarníková T., Ianson D., Allen S.E., Shao A.E., Olson E.M.. 2022.
+Anthropogenic carbon increase has caused critical shifts in aragonite saturation across a sensitive coastal system.
+Global Biogeochemical Cycles, 36(7).
+https://doi.org/10.1029/2021GB007024
+    </att>
+    <att name="drawLandMask">over</att>
+    <att name="history">null</att>
+    <att name="NCO">null</att>
+    <att name="name">null</att>
+    <att name="description">biogeochemical variables</att>
+  </addAttributes>
+  <axisVariable>
+    <sourceName>time</sourceName>
+    <destinationName>time</destinationName>
+    <!-- sourceAttributes>
+            <att name="_ChunkSizes" type="int">1</att>
+            <att name="calendar">proleptic_gregorian</att>
+            <att name="long_name">Time axis</att>
+            <att name="standard_name">time</att>
+            <att name="time_origin">2007-01-01 12:00:00</att>
+            <att name="units">days since 2007-01-01T12:00:00</att>
+        </sourceAttributes -->
+    <addAttributes>
+      <att name="_ChunkSizes">null</att>
+      <att name="coverage_content_type">modelResult</att>
+      <att name="comment">
+time values are UTC at the centre of the intervals over which the calculated model results are averaged;
+e.g. the field average values for January 2022 have a time value of 2022-01-15 12:00:00Z,
+and those for April 2022 have a time value of 2022-04-15 00:00:00Z
+      </att>
+      <att name="ioos_category">time</att>
+    </addAttributes>
+  </axisVariable>
+  <axisVariable>
+    <sourceName>depth</sourceName>
+    <destinationName>depth</destinationName>
+    <!-- sourceAttributes>
+            <att name="_ChunkSizes" type="int">40</att>
+            <att name="standard_name">sea_floor_depth</att>
+            <att name="long_name">Sea Floor Depth</att>
+            <att name="positive">down</att>
+            <att name="units">metres</att>
+        </sourceAttributes -->
+    <addAttributes>
+      <att name="_ChunkSizes">null</att>
+      <att name="long_name">Depth</att>
+      <att name="standard_name">depth</att>
+      <att name="units">m</att>
+      <att name="coverage_content_type">modelResult</att>
+      <att name="ioos_category">location</att>
+    </addAttributes>
+  </axisVariable>
+  <axisVariable>
+    <sourceName>gridY</sourceName>
+    <destinationName>gridY</destinationName>
+    <!-- sourceAttributes>
+        </sourceAttributes -->
+    <addAttributes>
+      <att name="long_name">Grid Y</att>
+      <att name="standard_name">y</att>
+      <att name="coverage_content_type">modelResult</att>
+      <att name="comment">gridY values are grid indices in the model y-direction;
+geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset.
+      </att>
+      <att name="ioos_category">location</att>
+    </addAttributes>
+  </axisVariable>
+  <axisVariable>
+    <sourceName>gridX</sourceName>
+    <destinationName>gridX</destinationName>
+    <!-- sourceAttributes>
+        </sourceAttributes -->
+    <addAttributes>
+      <att name="long_name">Grid X</att>
+      <att name="standard_name">x</att>
+      <att name="coverage_content_type">modelResult</att>
+      <att name="comment">gridX values are grid indices in the model x-direction;
+geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset.
+      </att>
+      <att name="ioos_category">location</att>
+    </addAttributes>
+  </axisVariable>
+
+  <dataVariable>
+      <sourceName>dissolved_inorganic_carbon</sourceName>
+      <destinationName>dissolved_inorganic_carbon</destinationName>
+      <dataType>float</dataType>
+      <!-- sourceAttributes>
+          <att name="_ChunkSizes" type="intList">1 40 898 398</att>
+          <att name="_FillValue" type="float">NaNf</att>
+          <att name="long_name">Dissolved Inorganic C Concentration</att>
+          <att name="standard_name">mole_concentration_of_dissolved_inorganic_carbon_in_sea_water</att>
+          <att name="units">mmol m-3</att>
+      </sourceAttributes -->
+      <addAttributes>
+        <att name="long_name">Dissolved Inorganic C Concentration</att>
+        <att name="standard_name">mole_concentration_of_dissolved_inorganic_carbon_in_sea_water</att>
+        <att name="units">mmol m-3</att>
+        <att name="ioos_category">co2</att>
+        <att name="colorBarMaximum" type="double">2400.0</att>
+        <att name="colorBarMinimum" type="double">600.0</att>
+        <att name="_ChunkSizes">null</att>
+        <att name="coverage_content_type">modelResult</att>
+      </addAttributes>
+  </dataVariable>
+
+  <dataVariable>
+      <sourceName>total_alkalinity</sourceName>
+      <destinationName>total_alkalinity</destinationName>
+      <dataType>float</dataType>
+      <!-- sourceAttributes>
+          <att name="_ChunkSizes" type="intList">1 40 898 398</att>
+          <att name="_FillValue" type="float">NaNf</att>
+          <att name="long_name">Total Alkalinity Concentration</att>
+          <att name="standard_name">sea_water_alkalinity_expressed_as_mole_equivalent</att>
+          <att name="units">mmol m-3</att>
+      </sourceAttributes -->
+      <addAttributes>
+        <att name="long_name">Total Alkalinity Concentration</att>
+        <att name="standard_name">sea_water_alkalinity_expressed_as_mole_equivalent</att>
+        <att name="units">mmol m-3</att>
+        <att name="ioos_category">co2</att>
+        <att name="colorBarMaximum" type="double">2400.0</att>
+        <att name="colorBarMinimum" type="double">500.0</att>
+        <att name="_ChunkSizes">null</att>
+        <att name="coverage_content_type">modelResult</att>
+      </addAttributes>
+  </dataVariable>
+
+  <dataVariable>
+      <sourceName>dissolved_oxygen</sourceName>
+      <destinationName>dissolved_oxygen</destinationName>
+      <dataType>float</dataType>
+      <!-- sourceAttributes>
+          <att name="_ChunkSizes" type="intList">1 40 898 398</att>
+          <att name="_FillValue" type="float">NaNf</att>
+          <att name="long_name">Dissolved Oxygen Concentration</att>
+          <att name="standard_name">mole_concentration_of_dissolved_molecular_oxygen_in_sea_water</att>
+          <att name="units">mmol m-3</att>
+      </sourceAttributes -->
+      <addAttributes>
+        <att name="long_name">Dissolved Oxygen Concentration</att>
+        <att name="standard_name">mole_concentration_of_dissolved_molecular_oxygen_in_sea_water</att>
+        <att name="units">mmol m-3</att>
+        <att name="ioos_category">dissolved_o2</att>
+        <att name="colorBarMaximum" type="double">500.0</att>
+        <att name="colorBarMinimum" type="double">0.0</att>
+        <att name="_ChunkSizes">null</att>
+        <att name="coverage_content_type">modelResult</att>
+      </addAttributes>
+  </dataVariable>
+</dataset>