Skip to content

Commit

Permalink
Add ubcSSg3DChemistryFields1moV21-11 dataset
Browse files Browse the repository at this point in the history
  • Loading branch information
@douglatornell
douglatornell committed Nov 6, 2024
1 parent 77985d2 commit 36233d2
Show file tree
Hide file tree
Showing 3 changed files with 566 additions and 0 deletions.
282 changes: 282 additions & 0 deletions datasets.xml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5734,6 +5734,288 @@ geo-location data for the SalishSeaCast NEMO model grid is available in the ubcS
</dataVariable>
</dataset>

<dataset type="EDDGridFromNcFiles" datasetID="ubcSSg3DChemistryFields1moV21-11" active="true">
<reloadEveryNMinutes>10080</reloadEveryNMinutes>
<updateEveryNMillis>10000</updateEveryNMillis>
<fileDir>/results2/SalishSea/month-avg.202111/</fileDir>
<recursive>true</recursive>
<fileNameRegex>.*SalishSea_1m_chem_T_\d{8}_\d{8}\.nc$</fileNameRegex>
<metadataFrom>last</metadataFrom>
<matchAxisNDigits>20</matchAxisNDigits>
<fileTableInMemory>false</fileTableInMemory>
<accessibleViaFiles>false</accessibleViaFiles>
<!-- sourceAttributes>
<att name="Conventions">CF-1.6</att>
<att name="description">ocean T grid variables</att>
<att name="title">ocean T grid variables</att>
</sourceAttributes -->
<addAttributes>
<att name="testOutOfDate">now-36days</att>
<att name="cdm_data_type">Grid</att>
<att name="Conventions">CF-1.6, COARDS, ACDD-1.3</att>
<att name="infoUrl">https://salishsea.eos.ubc.ca/</att>
<att name="institution">UBC EOAS</att>
<att name="institution_fullname">Earth, Ocean &amp; Atmospheric Sciences, University of British Columbia</att>
<att name="keywords">
alkalinity,
carbon, chemistry, concentration, deptht, dissolved, dissolved_inorganic_carbon, dissolved_oxygen,
Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Alkalinity,
Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Carbon,
Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Inorganic Carbon,
Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Oxygen,
mole_concentration_of_dissolved_inorganic_carbon_in_sea_water,
mole_concentration_of_dissolved_molecular_oxygen_in_sea_water,
O2, ocean, oceans, oxygen,
sea, sea_water_alkalinity_expressed_as_mole_equivalent,
seawater, time_counter, total_alkalinity, water
</att>
<att name="license">The SalishSeaCast NEMO model results are copyright
by the SalishSeaCast Project Contributors and The University of British Columbia.

They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0</att>
<att name="standard_name_vocabulary">CF Standard Name Table v29</att>
<att name="summary">Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11

3d dissolved inorganic carbon, dissolved oxygen, and total alkalinity field values averaged over
1 month intervals from SalishSeaCast NEMO model runs with physics, biology and chemistry.
The values are calculated for the entire model grid that includes the Juan de Fuca Strait,
the Strait of Georgia, Puget Sound, and Johnstone Strait on the coasts of Washington State and British Columbia.
The time values are UTC.
They are the centre of the intervals over which the calculated model results are averaged;
e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z.
Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset.

v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry;
see infoUrl link for full details.
Dissolved inorganic carbon, dissolved oxygen, and total alkalinity variables.
</att>
<att name="title">Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11</att>
<att name="project">SalishSeaCast NEMO Model</att>
<att name="creator_name">SalishSeaCast Project Contributors</att>
<att name="creator_email">[email protected]</att>
<att name="creator_url">https://salishsea-meopar-docs.readthedocs.io/</att>
<att name="acknowledgement">MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada</att>
<att name="comment">If you use this dataset in your research,
please reference it with wording similar to the example below,
and include citations of the publications below.
Inclusion of the date(s) when you downloaded the dataset,
and the dataset id help to ensure reproducibility of your work.

Reference wording:

3d SKOG carbon chemistry and oxygen fields from the SalishSeaCast NEMO model
(Soontiens et al, 2016; Soontiens and Allen, 2017, Jarníková et al, 2022)
were downloaded from their ERDDAP server
(https://salishsea.eos.ubc.ca/erddap/)
on DATE from dataset ubcSSg3DChemistryFields1hV21-11.

Citations:

Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016.
Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21.
https://dx.doi.org/10.1080/07055900.2015.1108899

Soontiens, N. and Allen, S., 2017.
Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32.
https://dx.doi.org/10.1016/j.ocemod.2017.02.008

Jarníková T., Ianson D., Allen S.E., Shao A.E., Olson E.M.. 2022.
Anthropogenic carbon increase has caused critical shifts in aragonite saturation across a sensitive coastal system.
Global Biogeochemical Cycles, 36(7).
https://doi.org/10.1029/2021GB007024
</att>

<att name="drawLandMask">over</att>
<att name="history">null</att>
<att name="NCO">null</att>
<att name="name">null</att>
<att name="description">biogeochemical variables</att>
</addAttributes>
<axisVariable>
<sourceName>time_counter</sourceName>
<destinationName>time</destinationName>
<!-- sourceAttributes>
<att name="_ChunkSize" type="int">1</att>
<att name="axis">T</att>
<att name="bounds">time_counter_bounds</att>
<att name="calendar">gregorian</att>
<att name="long_name">Time axis</att>
<att name="standard_name">time</att>
<att name="time_origin">1900-01-01 00:00:00</att>
<att name="units">seconds since 1900-01-01 00:00:00</att>
</sourceAttributes -->
<addAttributes>
<att name="_ChunkSizes">null</att>
<att name="bounds">null</att>
<att name="coverage_content_type">modelResult</att>
<att name="comment">time values are UTC at the centre of the intervals over which the calculated model results are averaged;
e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have a time value of 2021-06-03 00:30:00Z.
</att>
<att name="ioos_category">time</att>
</addAttributes>
</axisVariable>
<axisVariable>
<sourceName>deptht</sourceName>
<destinationName>depth</destinationName>
<!-- sourceAttributes>
<att name="_ChunkSize" type="int">40</att>
<att name="axis">Z</att>
<att name="bounds">deptht_bounds</att>
<att name="long_name">Vertical T levels</att>
<att name="name">deptht</att>
<att name="positive">down</att>
<att name="units">m</att>
</sourceAttributes -->
<addAttributes>
<att name="_ChunkSize">null</att>
<att name="_ChunkSizes">null</att>
<att name="bounds">null</att>
<att name="long_name">Depth</att>
<att name="standard_name">depth</att>
<att name="coverage_content_type">modelResult</att>
<att name="ioos_category">location</att>
</addAttributes>
</axisVariable>
<axisVariable>
<sourceName>y</sourceName>
<destinationName>gridY</destinationName>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">Grid Y</att>
<att name="standard_name">y</att>
<att name="coverage_content_type">modelResult</att>
<att name="comment">gridY values are grid indices in the model y-direction;
geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset.
</att>
<att name="ioos_category">location</att>
</addAttributes>
</axisVariable>
<axisVariable>
<sourceName>x</sourceName>
<destinationName>gridX</destinationName>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">Grid X</att>
<att name="standard_name">x</att>
<att name="coverage_content_type">modelResult</att>
<att name="comment">gridX values are grid indices in the model x-direction;
geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset.
</att>
<att name="ioos_category">location</att>
</addAttributes>
</axisVariable>

<dataVariable>
<sourceName>dissolved_inorganic_carbon</sourceName>
<destinationName>dissolved_inorganic_carbon</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
<att name="_ChunkSizes" type="intList">1 40 898 398</att>
<att name="_FillValue" type="float">1.0E20</att>
<att name="cell_measures">area: area</att>
<att name="cell_methods">time: mean (interval: 40 s)</att>
<att name="coordinates">time_centered deptht nav_lat nav_lon</att>
<att name="interval_operation">40 s</att>
<att name="interval_write">1 h</att>
<att name="long_name">Dissolved Inorganic C Concentration</att>
<att name="missing_value" type="float">1.0E20</att>
<att name="online_operation">average</att>
<att name="standard_name">mole_concentration_of_dissolved_inorganic_carbon_in_sea_water</att>
<att name="units">mmol m-3</att>
</sourceAttributes -->
<addAttributes>
<att name="long_name">Dissolved Inorganic C Concentration</att>
<att name="standard_name">mole_concentration_of_dissolved_inorganic_carbon_in_sea_water</att>
<att name="units">mmol m-3</att>
<att name="ioos_category">co2</att>
<att name="colorBarMaximum" type="double">2400.0</att>
<att name="colorBarMinimum" type="double">600.0</att>
<att name="_ChunkSizes">null</att>
<att name="coordinates">null</att>
<att name="coverage_content_type">modelResult</att>
<att name="cell_measures">null</att>
<att name="cell_methods">null</att>
<att name="interval_operation">null</att>
<att name="interval_write">null</att>
<att name="online_operation">null</att>
</addAttributes>
</dataVariable>

<dataVariable>
<sourceName>total_alkalinity</sourceName>
<destinationName>total_alkalinity</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
<att name="_ChunkSizes" type="intList">1 40 898 398</att>
<att name="_FillValue" type="float">1.0E20</att>
<att name="cell_measures">area: area</att>
<att name="cell_methods">time: mean (interval: 40 s)</att>
<att name="coordinates">time_centered deptht nav_lat nav_lon</att>
<att name="interval_operation">40 s</att>
<att name="interval_write">1 h</att>
<att name="long_name">Total Alkalinity Concentration</att>
<att name="missing_value" type="float">1.0E20</att>
<att name="online_operation">average</att>
<att name="standard_name">sea_water_alkalinity_expressed_as_mole_equivalent</att>
<att name="units">mmol m-3</att>
</sourceAttributes -->
<addAttributes>
<att name="long_name">Total Alkalinity Concentration</att>
<att name="standard_name">sea_water_alkalinity_expressed_as_mole_equivalent</att>
<att name="units">mmol m-3</att>
<att name="ioos_category">co2</att>
<att name="colorBarMaximum" type="double">2400.0</att>
<att name="colorBarMinimum" type="double">500.0</att>
<att name="_ChunkSizes">null</att>
<att name="coordinates">null</att>
<att name="coverage_content_type">modelResult</att>
<att name="cell_measures">null</att>
<att name="cell_methods">null</att>
<att name="interval_operation">null</att>
<att name="interval_write">null</att>
<att name="online_operation">null</att>
</addAttributes>
</dataVariable>

<dataVariable>
<sourceName>dissolved_oxygen</sourceName>
<destinationName>dissolved_oxygen</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
<att name="_ChunkSizes" type="intList">1 40 898 398</att>
<att name="_FillValue" type="float">1.0E20</att>
<att name="cell_measures">area: area</att>
<att name="cell_methods">time: mean (interval: 40 s)</att>
<att name="coordinates">time_centered deptht nav_lat nav_lon</att>
<att name="interval_operation">40 s</att>
<att name="interval_write">1 h</att>
<att name="long_name">Dissolved Oxygen Concentration</att>
<att name="missing_value" type="float">1.0E20</att>
<att name="online_operation">average</att>
<att name="standard_name">mole_concentration_of_dissolved_molecular_oxygen_in_sea_water</att>
<att name="units">mmol m-3</att>
</sourceAttributes -->
<addAttributes>
<att name="long_name">Dissolved Oxygen Concentration</att>
<att name="standard_name">mole_concentration_of_dissolved_molecular_oxygen_in_sea_water</att>
<att name="units">mmol m-3</att>
<att name="ioos_category">dissolved_o2</att>
<att name="colorBarMaximum" type="double">500.0</att>
<att name="colorBarMinimum" type="double">0.0</att>
<att name="_ChunkSizes">null</att>
<att name="coordinates">null</att>
<att name="coverage_content_type">modelResult</att>
<att name="cell_measures">null</att>
<att name="cell_methods">null</att>
<att name="interval_operation">null</att>
<att name="interval_write">null</att>
<att name="online_operation">null</att>
</addAttributes>
</dataVariable>
</dataset>

<dataset type="EDDGridFromNcFiles" datasetID="ubcSSg3DuGridFields1hV19-05" active="true">
<reloadEveryNMinutes>10080</reloadEveryNMinutes>
<updateEveryNMillis>10000</updateEveryNMillis>
Expand Down
3 changes: 3 additions & 0 deletions datasets.yaml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -39,6 +39,9 @@ datasets:
- ssc-nemo-202111/ubcSSg3DChemistryFields1hV21-11.xml
- ssc-nemo-202111/ubcSSgSeaSurfaceCO2FluxField1hV21-11.xml
- ssc-nemo-202111/ubcSSg3DVariableVolumeLayers1hV21-11.xml
# month-averaged fields
- ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml

# SalishSeaCast NEMO v2019-05 results
# hour-averaged fields
- ssc-nemo-201905/ubcSSg3DuGridFields1hV19-05.xml
Expand Down
Loading

0 comments on commit 36233d2

Please sign in to comment.