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Add more month-avg reshapr configs for make_averaged_dataset
These YAML configuration files resample daily biological growth rate and grazing/mortality fields to monthly averages for the SalishSeaCast v202111 model. They specify the variables to extract, the resampling method, and the destination for the output files.
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# `reshapr extract` config to resample v202111 day-average grzing & mortality fields | ||
# to month-average | ||
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dataset: | ||
model profile: SalishSeaCast-202111-salish.yaml | ||
time base: day | ||
variables group: biology growth rates | ||
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dask cluster: tcp://142.103.36.12:4386 | ||
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# Placeholder state/end dates that are overridden by worker's run-date arg | ||
start date: 2007-01-01 | ||
end date: 2007-01-31 | ||
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extract variables: | ||
- PPDIAT | ||
- PPPHY | ||
- PPDIATNO3 | ||
- PPPHYNO3 | ||
- TQ10 | ||
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resample: | ||
time interval: 1M | ||
aggregation: mean | ||
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extracted dataset: | ||
name: SalishSeaCast_1m_prod_T | ||
description: Month-averaged biology growth rate variables resampled from | ||
v202111 SalishSea_1d_*_prod_T.nc | ||
deflate: True | ||
format: NETCDF4 | ||
dest dir: /results2/SalishSea/month-avg.202111/ |
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config/reshapr/month-average_202111_grazing_mortality.yaml
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# `reshapr extract` config to resample v202111 day-average grzing & mortality fields | ||
# to month-average | ||
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dataset: | ||
model profile: SalishSeaCast-202111-salish.yaml | ||
time base: day | ||
variables group: grazing | ||
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dask cluster: tcp://142.103.36.12:4386 | ||
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# Placeholder state/end dates that are overridden by worker's run-date arg | ||
start date: 2007-01-01 | ||
end date: 2007-01-31 | ||
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extract variables: | ||
- MORTPHY | ||
- MORTDIAT | ||
- MORTMICZ | ||
- GRMESZDIAT | ||
- GRMESZPHY | ||
- GRMESZPON | ||
- GRMESZMICZ | ||
- GRMICZDIAT | ||
- GRMICZPHY | ||
- GRMICZPON | ||
- GRMICZMICZ | ||
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resample: | ||
time interval: 1M | ||
aggregation: mean | ||
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extracted dataset: | ||
name: SalishSeaCast_1m_graz_T | ||
description: Month-averaged grazing and mortality variables resampled from | ||
v202111 SalishSea_1d_*_graz_T.nc | ||
deflate: True | ||
format: NETCDF4 | ||
dest dir: /results2/SalishSea/month-avg.202111/ |