Fixed output file path and addressed SonarCloud issue

Sage-Bionetworks · Nov 20, 2024 · 8e2325b · 8e2325b
1 parent 494405a
commit 8e2325b
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/data_analysis/agora/notebooks/preprocessing/AG-1563_Preprocess_Pharos_Class.ipynb b/data_analysis/agora/notebooks/preprocessing/AG-1563_Preprocess_Pharos_Class.ipynb
@@ -514,6 +514,7 @@
     "    how=\"inner\",\n",
     "    left_on=\"uniprot_id\",\n",
     "    right_on=\"UniProtKB_accession\",\n",
+    "    validate=\"one_to_many\",\n",
     ").rename(columns={\"RESOURCE_IDENTIFIER\": \"ensembl_gene_id\"})\n",
     "\n",
     "final_df = final_df[\n",
@@ -536,7 +537,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "final_df.to_csv(\"../output/pharos_classes.csv\", index=False)"
+    "final_df.to_csv(\"../../output/pharos_classes.csv\", index=False)"
    ]
   }
  ],