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  1. Stereopy Stereopy Public

    A toolkit of spatial transcriptomic analysis.

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  2. SAW SAW Public

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  3. CellBin CellBin Public

    Tools for generating single-cell gene expression data

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  4. StereoMMv1 StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an a…

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  5. ST_BarcodeMap ST_BarcodeMap Public

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  6. StereoSiTE StereoSiTE Public

    Spatial transcriptome analysis in python

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  • cellbin2 Public

    This repository is for CellBin research group

    STOmics/cellbin2’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Nov 29, 2024
  • Stereopy Public

    A toolkit of spatial transcriptomic analysis.

    STOmics/Stereopy’s past year of commit activity
    Jupyter Notebook 202 MIT 65 15 0 Updated Nov 29, 2024
  • cs-benchmark Public

    This repository is for cell segmentation benchmark

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    PureBasic 0 MIT 0 0 0 Updated Nov 28, 2024
  • StereoSiTE Public

    Spatial transcriptome analysis in python

    STOmics/StereoSiTE’s past year of commit activity
    Jupyter Notebook 21 GPL-3.0 0 3 0 Updated Nov 12, 2024
  • CoDi Public
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    Jupyter Notebook 1 0 2 0 Updated Nov 5, 2024
  • SAW Public
    STOmics/SAW’s past year of commit activity
    HTML 145 GPL-3.0 33 36 3 Updated Sep 18, 2024
  • StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an attention mechanism.

    STOmics/StereoMMv1’s past year of commit activity
    Jupyter Notebook 28 1 1 0 Updated Aug 5, 2024
  • EAGS Public

    EAGS:efficient and adaptive Gaussian smoothing

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    Python 5 MIT 0 0 0 Updated Aug 2, 2024
  • ST-GEARS Public

    A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors

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    Jupyter Notebook 12 MIT 0 2 0 Updated Jul 30, 2024
  • Spatialign Public

    Spatially Resolved Transcriptomics Integration Algorithm

    STOmics/Spatialign’s past year of commit activity
    Jupyter Notebook 4 MIT 0 1 0 Updated Jul 29, 2024

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