Final wording for tut 2,3,4

SPARC-FAIR-Codeathon · Aug 8, 2023 · fe6b09a · fe6b09a
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diff --git a/tutorials/tutorial_2/tutorial_2_creating_standarised_workflow_description.ipynb b/tutorials/tutorial_2/tutorial_2_creating_standarised_workflow_description.ipynb
@@ -1,7 +1,6 @@
 {
  "cells": [
   {
-   "attachments": {},
    "cell_type": "markdown",
    "id": "d11c31ec",
    "metadata": {},
@@ -18,7 +17,15 @@
    "execution_count": 1,
    "id": "8f28bf9a",
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Please run on linux, sparc_flow does not yet support windows\n"
+     ]
+    }
+   ],
    "source": [
     "try:\n",
     "    import sparc_flow \n",
@@ -27,7 +34,6 @@
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "id": "279fdacd",
    "metadata": {},
@@ -75,7 +81,6 @@
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "id": "28c29b8e",
    "metadata": {},
@@ -132,7 +137,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.16"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/tutorial_3/tutorial_3_running_locally_with_cwltool.ipynb b/tutorials/tutorial_3/tutorial_3_running_locally_with_cwltool.ipynb
@@ -1,7 +1,6 @@
 {
  "cells": [
   {
-   "attachments": {},
    "cell_type": "markdown",
    "id": "2554948a",
    "metadata": {},
@@ -11,6 +10,8 @@
     "This tutorial will use sparc-flow to run the standardised workflow described in Tutorial 2 locally using cwltool. \n",
     "\n",
     "## Requirements\n",
+    "Tutorial 3 requires that you have first run tutorial 2 as it uses the work flows generated using sparc_flow. \n",
+    "\n",
     "pip install sparc_flow\n",
     "\n",
     "## Loading a workflow\n",
@@ -57,7 +58,6 @@
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "id": "e8838b92",
    "metadata": {},
@@ -82,16 +82,30 @@
     }
    ],
    "source": [
-    "workflow.run() \n"
+    "workflow.run() "
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "id": "b037bb11",
    "metadata": {},
    "source": [
-    "This executes the work flow and saves(?) the output to an SDS located (??)."
+    "Here we are displaying the data generated by the workflow which has been saved into the tutorial folder."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4f86a4f9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import matplotlib as plt\n",
+    "plt.figure(figsize = (10,6))\n",
+    "plt.imshow(plt.imread('output.png'))\n",
+    "plt.axis('off')\n",
+    "plt.title(\"Output of workflow\")\n",
+    "plt.show()"
    ]
   }
  ],
@@ -111,7 +125,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.16"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/tutorial_4/tutorial_4_running_locally_with_docstore.ipynb b/tutorials/tutorial_4/tutorial_4_running_locally_with_docstore.ipynb
@@ -6,7 +6,7 @@
    "metadata": {},
    "source": [
     "# Tutorial 4: Running a workflow locally using docstore\n",
-    "This tutorial will use sparc-flow to run the standardised workflow described in Tutorial 2 locally using Dockstore.\n",
+    "This tutorial will use sparc-flow to run the standardised workflow described in Tutorial 2 locally using Dockstore. Tutorial 4 requires that you have first run tutorial 2 in order to generate the workflow.\n",
     "\n",
     "## Installing Dockstore CLI\n",
     "These instructions are suitable for the following systems: Linux/Ubuntu/MacOS\n",