eta time

SMLC-NYSBC · Dec 28, 2024 · cb518e5 · cb518e5
1 parent 550a977
commit cb518e5
Showing 1 changed file with 15 additions and 7 deletions.
diff --git a/tardis_em/utils/predictor.py b/tardis_em/utils/predictor.py
@@ -188,6 +188,7 @@ def __init__(
         self.device = get_device(device_s)
         self.debug = debug
         self.semantic_header, self.instance_header, self.log_prediction = [], [], []
+        self.eta_predict = "NA"
 
         """Initial Setup"""
         if debug:
@@ -786,15 +787,16 @@ def predict_cnn(self, id_i: int, id_name: str, dataloader):
             pred_title = f"CNN prediction with four 90 degree rotations with {self.convolution_nn}"
         else:
             pred_title = f"CNN prediction with {self.convolution_nn}"
+        eta_time = "NA"
 
         for j in range(len(dataloader)):
             if j % iter_time == 0 and self.tardis_logo:
                 # Tardis progress bar update
                 self.tardis_progress(
                     title=self.title,
-                    text_1=f"Found {len(self.predict_list)} images to predict!",
+                    text_1=f"Found {len(self.predict_list)} images to predict! [{self.eta_predict} ETA]",
                     text_2=f"Device: {self.device}",
-                    text_3=f"Image {id_i + 1}/{len(self.predict_list)}: {id_name}",
+                    text_3=f"Image {id_i + 1}/{len(self.predict_list)} [{eta_time} ETA]: {id_name}",
                     text_4=f"Org. Pixel size: {self.px} A | Norm. Pixel size: {self.normalize_px}",
                     text_5=pred_title,
                     text_7="Current Task: CNN prediction...",
@@ -812,6 +814,8 @@ def predict_cnn(self, id_i: int, id_name: str, dataloader):
 
                 # Scale progress bar refresh to 10s
                 end = time.time()
+                eta_time = str(round(((end - start) * (len(dataloader) - j)) / 60, 1)) + "min"
+
                 iter_time = 10 // (end - start)
                 if iter_time <= 1:
                     iter_time = 1
@@ -965,7 +969,7 @@ def predict_DIST(self, id_i: int, id_name: str):
             if id_dist % iter_time == 0 and self.tardis_logo:
                 self.tardis_progress(
                     title=self.title,
-                    text_1=f"Found {len(self.predict_list)} images to predict!",
+                    text_1=f"Found {len(self.predict_list)} images to predict! [{self.eta_predict} ETA]",
                     text_2=f"Device: {self.device}",
                     text_3=f"Image {id_i + 1}/{len(self.predict_list)}: {id_name}",
                     text_4=f"Org. Pixel size: {self.px} A | Norm. Pixel size: {self.normalize_px}",
@@ -981,7 +985,7 @@ def predict_DIST(self, id_i: int, id_name: str):
         if self.tardis_logo:
             self.tardis_progress(
                 title=self.title,
-                text_1=f"Found {len(self.predict_list)} images to predict!",
+                text_1=f"Found {len(self.predict_list)} images to predict! [{self.eta_predict} ETA]",
                 text_2=f"Device: {self.device}",
                 text_3=f"Image {id_i + 1}/{len(self.predict_list)}: {id_name}",
                 text_4=f"Org. Pixel size: {self.px} A | Norm. Pixel size: {self.normalize_px}",
@@ -1064,7 +1068,7 @@ def postprocess_DIST(self, id_i, i):
 
             self.tardis_progress(
                 title=self.title,
-                text_1=f"Found {len(self.predict_list)} images to predict!",
+                text_1=f"Found {len(self.predict_list)} images to predict! [{self.eta_predict} ETA]",
                 text_2=f"Device: {self.device}",
                 text_3=f"Image {id_i + 1}/{len(self.predict_list)}: {i}",
                 text_4=f"Org. Pixel size: {self.px} A | Norm. Pixel size: {self.normalize_px}",
@@ -1155,7 +1159,7 @@ def get_file_list(self):
             else:
                 self.tardis_progress(
                     title=self.title,
-                    text_1=f"Found {len(self.predict_list)} images to predict!",
+                    text_1=f"Found {len(self.predict_list)} images to predict! [{self.eta_predict} ETA]",
                     text_2=f"Device: {self.device}",
                     text_7="Current Task: Setting-up environment...",
                 )
@@ -1190,7 +1194,7 @@ def log_tardis(self, id_i: int, i: Union[str, np.ndarray], log_id: float):
 
         # Common text for all configurations
         common_text = {
-            "text_1": f"Found {len(self.predict_list)} images to predict!",
+            "text_1": f"Found {len(self.predict_list)} images to predict! [{self.eta_predict} ETA]",
             "text_2": f"Device: {self.device}",
             "text_3": f"Image {id_i + 1}/{len(self.predict_list)}: {i}",
         }
@@ -1645,6 +1649,8 @@ def __call__(self, save_progres=False):
 
         semantic_output, instance_output, instance_filter_output = [], [], []
         for id_, i in enumerate(self.predict_list):
+            start_predict = time.time()
+
             """CNN Pre-Processing"""
             if isinstance(i, str):
                 # Find a file format
@@ -1817,6 +1823,8 @@ def __call__(self, save_progres=False):
 
             """Clean-up temp dir"""
             clean_up(dir_s=self.dir)
+            end_predict = time.time()
+            self.eta_predict = str(round((end_predict - start_predict) / 60, 2)) + " min"
 
         """Optional return"""
         if self.output_format.startswith("return"):