ADD test data from giga connectome artefact (#3)

* ADD test data from giga connectome artefact Just one subject * FIX atlases/ should be include the func level FIX error in file name * MeanFrameWiseDisplacement -> MeanFramewiseDisplacement
SIMEXP · May 16, 2024 · 7e43bf8 · 7e43bf8
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diff --git a/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks100Parcels_dseg.nii.gz b/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks100Parcels_dseg.nii.gz
diff --git a/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks200Parcels_dseg.nii.gz b/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks200Parcels_dseg.nii.gz
diff --git a/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks300Parcels_dseg.nii.gz b/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks300Parcels_dseg.nii.gz
diff --git a/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks400Parcels_dseg.nii.gz b/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks400Parcels_dseg.nii.gz
diff --git a/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks500Parcels_dseg.nii.gz b/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks500Parcels_dseg.nii.gz
diff --git a/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks600Parcels_dseg.nii.gz b/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks600Parcels_dseg.nii.gz
diff --git a/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks800Parcels_dseg.nii.gz b/...0187Networks_dev/atlases/sub-1/func/sub-1_seg-Schaefer20187Networks800Parcels_dseg.nii.gz
diff --git a/...etworks_dev/atlases/sub-1/func/sub-1_space-MNI152NLin2009cAsym_res-2_label-GM_mask.nii.gz b/...etworks_dev/atlases/sub-1/func/sub-1_space-MNI152NLin2009cAsym_res-2_label-GM_mask.nii.gz
diff --git a/wonkyconn/data/test_data/connectome_Schaefer20187Networks_dev/dataset_description.json b/wonkyconn/data/test_data/connectome_Schaefer20187Networks_dev/dataset_description.json
@@ -0,0 +1,16 @@
+{
+    "BIDSVersion": "1.9.0",
+    "License": null,
+    "Name": null,
+    "ReferencesAndLinks": [],
+    "DatasetDOI": null,
+    "DatasetType": "derivative",
+    "GeneratedBy": [
+        {
+            "Name": "giga_connectome",
+            "Version": "0.5.1.dev13+gd722c8a.d20240502",
+            "CodeURL": "https://github.com/bids-apps/giga_connectome.git"
+        }
+    ],
+    "HowToAcknowledge": "Please refer to our repository: https://github.com/bids-apps/giga_connectome.git."
+}
diff --git a/wonkyconn/data/test_data/connectome_Schaefer20187Networks_dev/logs/CITATION.md b/wonkyconn/data/test_data/connectome_Schaefer20187Networks_dev/logs/CITATION.md
@@ -0,0 +1,26 @@
+These results were generated with
+giga_connectome (version 0.5.1.dev13+gd722c8a.d20240502, https://giga-connectome.readthedocs.io/en/latest/)
+using Nilearn (version 0.10.3, RRID:SCR_001362)
+and TemplateFlow (version 0.8.1).
+
+The following steps were followed.
+
+1. Retrieve subject specific grey matter mask in MNI space (MNI152NLin2009cAsym).
+
+1. Sampled the Schaefer20187Networks atlas to the space of subject specific grey matter mask in MNI space.
+
+1. Calculated the conjunction of the subject specific grey matter mask and resampled atlas to find valid parcels.
+
+1. Used the subject specific grey matter mask and atlas to extract time series and connectomes for each subject.
+   The time series data were denoised as follow:
+
+    - Time series extractions through label or map maskers are performed on the denoised nifti file.
+    - Denoising steps were performed on the voxel level:
+        - spatial smoothing (FWHM: 5.0 mm)
+        - detrending, only if high pass filter was not applied through confounds
+        - regressing out confounds (using a simple strategy)
+        - standardized (using zscore)
+    - Extracted time series from atlas
+    - Computed correlation matrix (Pearson's correlation with LedoitWolf covariance estimator)
+
+
diff --git a/...n/data/test_data/connectome_Schaefer20187Networks_dev/meas-PearsonCorrelation_relmat.json b/...n/data/test_data/connectome_Schaefer20187Networks_dev/meas-PearsonCorrelation_relmat.json
@@ -0,0 +1,10 @@
+{
+    "Measure": "Pearson correlation",
+    "MeasureDescription": "Pearson correlation",
+    "Weighted": false,
+    "Directed": false,
+    "ValidDiagonal": true,
+    "StorageFormat": "Full",
+    "NonNegative": "",
+    "Code": "https://github.com/bids-apps/giga_connectome.git"
+}
diff --git a/...ses-timepoint1_task-probabilisticclassification_run-01_desc-denoiseSimple_timeseries.json b/...ses-timepoint1_task-probabilisticclassification_run-01_desc-denoiseSimple_timeseries.json
@@ -0,0 +1 @@
+{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}
diff --git a/...assification_run-01_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...ses-timepoint1_task-probabilisticclassification_run-02_desc-denoiseSimple_timeseries.json b/...ses-timepoint1_task-probabilisticclassification_run-02_desc-denoiseSimple_timeseries.json
@@ -0,0 +1 @@
+{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}
diff --git a/...assification_run-02_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...b-1_ses-timepoint1_task-selectivestopsignaltask_run-01_desc-denoiseSimple_timeseries.json b/...b-1_ses-timepoint1_task-selectivestopsignaltask_run-01_desc-denoiseSimple_timeseries.json
@@ -0,0 +1 @@
+{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}
diff --git a/...opsignaltask_run-01_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-01_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-01_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-01_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-01_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-01_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-01_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-01_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-01_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-01_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-01_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-01_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-01_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-01_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...b-1_ses-timepoint1_task-selectivestopsignaltask_run-02_desc-denoiseSimple_timeseries.json b/...b-1_ses-timepoint1_task-selectivestopsignaltask_run-02_desc-denoiseSimple_timeseries.json
@@ -0,0 +1 @@
+{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}
diff --git a/...opsignaltask_run-02_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-02_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-02_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-02_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-02_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-02_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-02_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-02_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-02_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-02_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-02_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-02_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-02_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-02_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...b-1_ses-timepoint1_task-selectivestopsignaltask_run-03_desc-denoiseSimple_timeseries.json b/...b-1_ses-timepoint1_task-selectivestopsignaltask_run-03_desc-denoiseSimple_timeseries.json
@@ -0,0 +1 @@
+{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}
diff --git a/...opsignaltask_run-03_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-03_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-03_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-03_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-03_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-03_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-03_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-03_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-03_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-03_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-03_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-03_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...opsignaltask_run-03_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv b/...opsignaltask_run-03_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...ses-timepoint2_task-probabilisticclassification_run-01_desc-denoiseSimple_timeseries.json b/...ses-timepoint2_task-probabilisticclassification_run-01_desc-denoiseSimple_timeseries.json
@@ -0,0 +1 @@
+{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}
diff --git a/...assification_run-01_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks600Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks600Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-01_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-01_seg-Schaefer20187Networks800Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks800Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...ses-timepoint2_task-probabilisticclassification_run-02_desc-denoiseSimple_timeseries.json b/...ses-timepoint2_task-probabilisticclassification_run-02_desc-denoiseSimple_timeseries.json
@@ -0,0 +1 @@
+{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}
diff --git a/...assification_run-02_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks100Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks100Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks200Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks200Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks300Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks300Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks400Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks400Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
diff --git a/...assification_run-02_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv b/...assification_run-02_seg-Schaefer20187Networks500Parcels_desc-denoiseSimple_timeseries.tsv
diff --git a/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv b/...seg-Schaefer20187Networks500Parcels_meas-PearsonCorrelation_desc-denoiseSimple_relmat.tsv
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		{"MeanFramewiseDisplacement": 0.03, "ConfoundRegressors": ["csf", "white_matter", "grey_matter", "cosine00", "cosine01", "cosine02", "cosine03", "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z"], "NumberOfVolumesDiscardedByMotionScrubbing": 0, "NumberOfVolumesDiscardedByNonsteadyStatesDetector": 5, "SamplingFrequency": 0.5}