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This sets the parent for various planned rad exposure to OBI:planned process #214

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This sets the parent for various planned rad exposure to OBI:planned process #214

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0c80dff
Specify by ID OBI:Planned Process for radiationexposures
DanBerrios Apr 26, 2024
e51a33e
Build
DanBerrios Apr 26, 2024
bb8ccf8
Add addl planned prcoess ID
DanBerrios Apr 26, 2024
7e14d28
Turn on mirroring
DanBerrios Apr 29, 2024
9fab02f
Turn on large mirroring
DanBerrios Apr 29, 2024
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35 changes: 18 additions & 17 deletions rbo-base.owl
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@@ -1,23 +1,24 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/rbo/rbo-base.owl#"
xml:base="http://purl.obolibrary.org/obo/rbo/rbo-base.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:dce="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:core="http://purl.obolibrary.org/obo/uberon/core#"
xmlns:obda="https://w3id.org/obda/vocabulary#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/rbo-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-29/rbo-base.owl"/>
<dc:description>RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.</dc:description>
<dc:title>Radiation Biology Ontology</dc:title>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-02-29</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/rbo-base.owl"/>
<dce:description>RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.</dce:description>
<dce:title>Radiation Biology Ontology</dce:title>
<dce:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<dcterms:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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<!-- http://purl.org/dc/elements/1.1/type -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>



<!-- http://purl.org/dc/terms/license -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
Expand Down Expand Up @@ -403,12 +410,6 @@



<!-- http://purl.obolibrary.org/obo/COB_0000082 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000082"/>



<!-- http://purl.obolibrary.org/obo/DOID_4 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_4">
Expand Down Expand Up @@ -1853,7 +1854,7 @@
<!-- http://purl.obolibrary.org/obo/RBO_00002002 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00002002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002007"/>
<obo:IAO_0000115>Planned exposure of an entity to radiation of any type, for example as part of a medical or experimental procedure with the intention of exposing the entity to radiation energy internally or externally.</obo:IAO_0000115>
<obo:IAO_0000117>0000-0002-5111-7263</obo:IAO_0000117>
Expand Down Expand Up @@ -1926,7 +1927,7 @@
<!-- http://purl.obolibrary.org/obo/RBO_00002008 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00002008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002007"/>
<obo:IAO_0000115>Planned exposure to radiation generated through a device or exposure to a source emitting ionising radiation</obo:IAO_0000115>
<obo:IAO_0000117>0000-0002-5111-7263</obo:IAO_0000117>
Expand Down Expand Up @@ -4952,5 +4953,5 @@



<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->

28,861 changes: 12,078 additions & 16,783 deletions rbo-full.owl
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28,864 changes: 12,086 additions & 16,778 deletions rbo.owl
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6 changes: 3 additions & 3 deletions src/ontology/Makefile
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Expand Up @@ -338,9 +338,9 @@ $(COMPONENTSDIR)/%: | $(COMPONENTSDIR)
# Mirroring upstream ontologies
# ----------------------------------------

IMP=false# Global parameter to bypass import generation
MIR=false # Global parameter to bypass mirror generation
IMP_LARGE=false # Global parameter to bypass handling of large imports
IMP=true # Global parameter to bypass import generation
MIR=true # Global parameter to bypass mirror generation
IMP_LARGE=true # Global parameter to bypass handling of large imports



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12 changes: 3 additions & 9 deletions src/ontology/components/all_templates.owl
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Expand Up @@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/components/all_templates.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/components/all_templates.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/components/all_templates.owl"/>
</owl:Ontology>


Expand Down Expand Up @@ -174,12 +174,6 @@



<!-- http://purl.obolibrary.org/obo/COB_0000082 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000082"/>



<!-- http://purl.obolibrary.org/obo/ENVO_01000254 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01000254"/>
Expand Down Expand Up @@ -1562,7 +1556,7 @@
<!-- http://purl.obolibrary.org/obo/RBO_00002002 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00002002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002007"/>
<obo:IAO_0000115>Planned exposure of an entity to radiation of any type, for example as part of a medical or experimental procedure with the intention of exposing the entity to radiation energy internally or externally.</obo:IAO_0000115>
<obo:IAO_0000117>0000-0002-5111-7263</obo:IAO_0000117>
Expand Down Expand Up @@ -1635,7 +1629,7 @@
<!-- http://purl.obolibrary.org/obo/RBO_00002008 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00002008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002007"/>
<obo:IAO_0000115>Planned exposure to radiation generated through a device or exposure to a source emitting ionising radiation</obo:IAO_0000115>
<obo:IAO_0000117>0000-0002-5111-7263</obo:IAO_0000117>
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4 changes: 2 additions & 2 deletions src/ontology/imports/bfo_import.owl
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Expand Up @@ -11,9 +11,9 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/bfo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/bfo_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/bfo_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/chebi_import.owl
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Expand Up @@ -10,8 +10,8 @@
xmlns:chebi="http://purl.obolibrary.org/obo/chebi/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/chebi_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/chebi_import.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/chebi_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/chmo_import.owl
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Expand Up @@ -12,9 +12,9 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/chmo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/chmo_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/chmo_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/chmo/releases/2022-04-19/chmo.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/cob_import.owl
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Expand Up @@ -10,8 +10,8 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/cob_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/cob_import.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/cob_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/efo_import.owl
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Expand Up @@ -16,8 +16,8 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/efo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/efo_import.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/efo_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/envo_import.owl
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Expand Up @@ -19,8 +19,8 @@
xmlns:taxslim="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/envo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-08/imports/envo_import.owl"/>
<owl:versionInfo>2024-02-08</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/envo_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/go_import.owl
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Expand Up @@ -12,9 +12,9 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/go_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/go_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/go_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/go/releases/2024-01-17/go.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/ncbitaxon_import.owl
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Expand Up @@ -11,8 +11,8 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/ncbitaxon_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/ncbitaxon_import.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/ncbitaxon_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/obi_import.owl
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Expand Up @@ -12,9 +12,9 @@
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/obi_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/obi_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/obi_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/obi/2024-01-09/obi.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/pato_import.owl
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Expand Up @@ -24,8 +24,8 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/pato_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/pato_import.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/pato_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/pco_import.owl
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Expand Up @@ -17,9 +17,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/pco_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/pco_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/pco_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/pco/releases/2021-05-03/pco.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/ro_import.owl
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Expand Up @@ -18,9 +18,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/ro_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/ro_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/ro_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-08-18/ro.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/uberon_import.owl
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Expand Up @@ -32,8 +32,8 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/uberon_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/uberon_import.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/uberon_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/uo_import.owl
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Expand Up @@ -8,8 +8,8 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/uo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/uo_import.owl"/>
<owl:versionInfo>2024-02-06</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/uo_import.owl"/>
<owl:versionInfo>2024-04-26</owl:versionInfo>
</owl:Ontology>


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