revert import updates [#188]

Radiobiology-Informatics-Consortium · Jan 11, 2024 · 19c4bae · 19c4bae
1 parent 7f43eee
commit 19c4bae
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Showing 21 changed files with 46,261 additions and 238,793 deletions.
diff --git a/rbo-base.owl b/rbo-base.owl
@@ -12,12 +12,12 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/rbo-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2023-12-07/rbo-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-01-11/rbo-base.owl"/>
         <dc:description>RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.</dc:description>
         <dc:title>Radiation Biology Ontology</dc:title>
         <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-12-07</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-01-11</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -435,12 +435,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/ENVO_01001024 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001024"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/ENVO_01001488 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001488"/>
@@ -4018,7 +4012,7 @@
     <!-- http://purl.obolibrary.org/obo/RBO_00015004 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015004">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001024"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002118"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nuclear decay in which an alpha particle is emitted.</obo:IAO_0000115>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://goldbook.iupac.org/terms/view/A00005</obo:IAO_0000119>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/REX_0000017</oboInOwl:hasDbXref>
@@ -4031,7 +4025,7 @@
     <!-- http://purl.obolibrary.org/obo/RBO_00015005 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015005">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001024"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002118"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Radioactive decay in which a beta particle is emitted or in which orbital electron capture occurs.</obo:IAO_0000115>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://goldbook.iupac.org/B00572.html</obo:IAO_0000119>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/REX_0000007</oboInOwl:hasDbXref>
@@ -4453,7 +4447,7 @@
     <!-- http://purl.obolibrary.org/obo/RBO_010012 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_010012">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33252"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33252;obo:RBO_00005003"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An atomic nucleus, fully stripped of its orbital electrons, containing 2 or more protons. Nuclei containing between 2 protons (helium) and 6 protons (carbon) are sometimes referred to as light ions.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jack Miller</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In RBO--needs def from NCRP Glossary (https://ncrponline.org/wp-content/themes/ncrp/PDFs/NCRP-Composite-Glossary.pdf)</obo:IAO_0000119>
@@ -4613,6 +4607,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CHEBI_33252;obo:RBO_00005003 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_33252;obo:RBO_00005003"/>
+
+
+
     <!-- 
     ///////////////////////////////////////////////////////////////////////////////////////
     //

diff --git a/rbo-full.owl b/rbo-full.owl
diff --git a/rbo.owl b/rbo.owl
diff --git a/src/ontology/components/all_templates.owl b/src/ontology/components/all_templates.owl
@@ -9,7 +9,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/components/all_templates.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2023-12-18/components/all_templates.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-01-11/components/all_templates.owl"/>
     </owl:Ontology>
 
 
@@ -192,12 +192,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/ENVO_01001024 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001024"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/ENVO_01001488 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001488"/>
@@ -3702,7 +3696,7 @@
     <!-- http://purl.obolibrary.org/obo/RBO_00015004 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015004">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001024"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002118"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nuclear decay in which an alpha particle is emitted.</obo:IAO_0000115>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://goldbook.iupac.org/terms/view/A00005</obo:IAO_0000119>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/REX_0000017</oboInOwl:hasDbXref>
@@ -3715,7 +3709,7 @@
     <!-- http://purl.obolibrary.org/obo/RBO_00015005 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015005">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001024"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002118"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Radioactive decay in which a beta particle is emitted or in which orbital electron capture occurs.</obo:IAO_0000115>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://goldbook.iupac.org/B00572.html</obo:IAO_0000119>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/REX_0000007</oboInOwl:hasDbXref>

diff --git a/src/ontology/imports/bfo_import.owl b/src/ontology/imports/bfo_import.owl
@@ -10,9 +10,9 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:terms="http://purl.org/dc/terms/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/bfo_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2023-12-18/imports/bfo_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2022-10-05/imports/bfo_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"/>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-12-18</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-05</owl:versionInfo>
     </owl:Ontology>