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Full datafit code #2

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Full datafit code #2

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Commits on Apr 13, 2022

  1. Initial commit

    @shirokaw
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  2. Committing folders and preexisting active matter package for the ATP … 

    …consumption analysis.
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  3. Added Aster_Pipeline file

    @aduarte10
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  4. New file to explore image analysis.

    @shirokaw
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  5. Adding image analysis file for calibration.

    @shirokaw
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Commits on Jun 16, 2022

  1. Dataset from 2022-05-02 

    For data day with Rob and summer students on 6/16/22
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  2. take 2 data upload 2022-05-02

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Commits on Jun 23, 2022

  1. Ateam aster pipeline 6/22/22

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Commits on Jun 27, 2022

  1. Delete 2022-05-02_BL21K401_ATeam_R4_Pos0 directory 

    deleted data file
    @aduarte10
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  2. 6/27/2_com_1

    @aduarte10
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  3. Create data 

    New data folder
    @aduarte10
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  4. Delete data 

    accidentally uploaded file rather than folder
    @aduarte10
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  5. 6/27/22 does this fix the merge i hope so

    @aduarte10
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  6. added readme for data

    @aduarte10
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  7. atp-cal folder added

    @aduarte10
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  8. created folders for aster and atp cal pipelines

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  9. reorganization of stuff in analysis

    @aduarte10
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  10. Delete Aster_Pipeline.ipynb

    @aduarte10
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  11. Delete ATeam_Aster.ipynb

    @aduarte10
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  12. Delete iatp_calibration.py

    @aduarte10
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  13. added scripts

    @aduarte10
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  14. added sandbox

    @aduarte10
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  15. Moving circle 

    Creates moving circle script
    @catherineji
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  16. Adding circle script 

    Moving circle script in BeanShell
    @catherineji
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  17. Update MovingCircle_3pos.bsh 

    capitalized a "c"
    @catherineji
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  18. file

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  19. file

    @VictorGomezP
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Commits on Jun 28, 2022

  1. adding lag on each shape 

    title
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  2. working

    @VictorGomezP
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  3. working

    @VictorGomezP
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  4. fixing semicolon

    @catherineji
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  5. code

    @VictorGomezP
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  6. test

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  7. automatic to tif 

    implemented victor fix
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Commits on Jun 29, 2022

  1. ATeam pipeline

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  2. this time?

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  3. Merge branch 'main' of https://github.com/RPGroup-PBoC/am_atp

    @aduarte10
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Commits on Jun 30, 2022

  1. 6/30 com1 ana

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Commits on Jul 1, 2022

  1. com2 6/30

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Commits on Jul 3, 2022

  1. 7/2 com after reseting to orgin main

    @aduarte10
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Commits on Jul 5, 2022

  1. 7/4 Ana com1

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  2. 7/4 ana com2

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  3. updating script

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Commits on Jul 6, 2022

  1. 7/6 ATeam aster pipeline update

    @aduarte10
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  2. test

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  3. test

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Commits on Jul 7, 2022

  1. com Ana 7/6

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  2. triangle mask

    @catherineji
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  3. Merge branch 'main' of https://github.com/RPGroup-PBoC/am_atp

    @catherineji
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  4. triangle update

    @catherineji
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  5. script

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Commits on Jul 8, 2022

  1. read messy channels

    @catherineji
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  2. ana merge origin ahed of local Merge branch 'main' of https://github.… 

    …com/RPGroup-PBoC/am_atp
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Commits on Jul 9, 2022

  1. updated ateam analysis

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Commits on Jul 11, 2022

  1. Merge branch 'main' of https://github.com/RPGroup-PBoC/am_atp

    @aduarte10
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  2. calibrations ana 7/11

    @aduarte10
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  3. Update ATeam_Aster.ipynb

    @catherineji
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Commits on Jul 13, 2022

  1. testC

    @VictorGomezP
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  2. ana 7/13 .DS_Store added to .gitignore

    @aduarte10
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  3. Update ATeam_Aster.ipynb

    @catherineji
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  4. ATeam_ATP_Cal pipeline ana and victor 7/13

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  5. Update ATeam_Aster.ipynb 

    lost some brain cells here
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  6. ana moved lots of files

    @aduarte10
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  7. ana aster packages update

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  8. ana 7/13 another com

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  9. done

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Commits on Jul 14, 2022

  1. Create ATeam_Aster 1.ipynb 

    should run?
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  2. Create ATeam_Aster_please.ipynb 

    actually runs
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  3. Deleting unused files

    @catherineji
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  4. added calibration to aster pipeline ana 7/14

    @aduarte10
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Commits on Jul 18, 2022

  1. cytosim

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Commits on Jul 19, 2022

  1. Create 2022_07_19_Parameter_Sweep.ipynb

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Commits on Jul 20, 2022

  1. Update parameter sweep

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  2. cytosim notebook

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Commits on Jul 21, 2022

  1. Update 2022_07_19_Parameter_Sweep.ipynb

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Commits on Jul 22, 2022

  1. Create asterettes_cathy.cym 

    cym file w/ asterettes @ edges and contraction w/o dead motors
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Commits on Aug 2, 2022

  1. Create cylinder.cym 

    why airdrop when you can github
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  2. ana 8/1 aster pipeline

    @aduarte10
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Commits on Aug 4, 2022

  1. ana 8/3 ateam aster pipeline

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Commits on Aug 6, 2022

  1. ana 8/5

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Commits on Aug 7, 2022

  1. ana 8/7 commit Ateam pipeline

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Commits on Aug 10, 2022

  1. ana commit 8/10 ATEAm aster 7-30

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Commits on Aug 12, 2022

  1. squaster

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  2. squaster

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Commits on Aug 30, 2022

  1. Aug 30, 22 com ATEAm pipeleine

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Commits on Sep 30, 2022

  1. 9/30 update to aster pipeline and atp cal

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Commits on Oct 1, 2022

  1. ATeam pipeline start of sphere edits

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Commits on Mar 27, 2023

  1. moved gliding files

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  2. Ignore unwanted files

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  3. i think i just merged?

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  4. added soichi MT length analysis files and the gliding data (but thats… 

    … ignored anyways)
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Commits on Apr 10, 2023

  1. gliding analysis updates 20230410

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Commits on Apr 18, 2023

  1. lots of gliding updates

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Commits on Apr 20, 2023

  1. more gliding updates commit 20230419

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Commits on May 11, 2023

  1. lots of new gliding stufding stuff

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Commits on May 16, 2023

  1. starting work 20230515

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Commits on May 17, 2023

  1. 20230516 commit, added Amin to repo

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Commits on Jun 13, 2023

  1. june13,23 push

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Commits on Aug 27, 2023

  1. 20230827 commit Manyyyyy new changes especially gliding pipelines

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Commits on Nov 6, 2023

  1. added gliding and hydrolysis python notebooks and analyzed gliding data

    @aduarte10
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Commits on Nov 7, 2023

  1. worked on hydrolysis and calibration

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Commits on Nov 8, 2023

  1. 11/7 calibration pipeline

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  2. gliding analysis and small plot edit on calibration

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Commits on Nov 14, 2023

  1. ATP cal edits

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Commits on Nov 25, 2023

  1. hydrolysis

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Commits on Nov 26, 2023

  1. hydrolysis pipeline

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Commits on Nov 30, 2023

  1. ATP aster pipeline and hydrolysis stuff

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  2. hydrolysis markdown

    @aduarte10
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Commits on Dec 12, 2023

  1. some changes in aster - motor comsol figure

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Commits on Dec 21, 2023

  1. Pipeline for processing and saving all hydrolysis data. Preliminary p… 

    …ost-processing script for analysis.
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    mashok2 committed Dec 21, 2023
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  2. Merge branch 'main' into am_atp_comsol_20231220

    @mashok2
    mashok2 authored Dec 21, 2023
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  3. Merge pull request #1 from RPGroup-PBoC/am_atp_comsol_20231220 

    some changes in aster - motor comsol figure
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    mashok2 authored Dec 21, 2023
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Commits on Jan 7, 2024

  1. Added some comments to make analyze_hydrolysis function clearer.

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Commits on Jan 22, 2024

  1. Preliminary code file for fitting data to full curve

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    mashok2 committed Jan 22, 2024
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Commits on May 3, 2024

  1. Relevant estimation and minimization files. Code needs cleaning up.

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  2. All remaining file changes. Code needs to be cleaned up before mergin… 

    …g with origin.
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  3. Remaining files. Clean up before merge with origin.

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    mashok2 committed May 3, 2024
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  4. Removed some files.

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    mashok2 committed May 3, 2024
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Commits on May 28, 2024

  1. JB_param_est

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  2. 2/29/24 commit

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  3. 3/1/24 commit updated aster movies

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  4. AD 20240318 com1

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    aduarte10 authored and mashok2 committed May 28, 2024
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  5. AD 20240318 com2

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  6. AD com1 20230319

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  7. AD 20240320 start of automatic aster pipeline

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  8. 20240321 com2

    @aduarte10 @mashok2
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  9. AD working on automated_aster

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  10. AD 20240402 aster automate and atp cal distributions

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  11. 20240413 push

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  12. mostly the variance stuff on the atp calibration file may 1 AD commit

    @aduarte10 @mashok2
    aduarte10 authored and mashok2 committed May 28, 2024
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  13. changes to least squares minimization

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    mashok2 committed May 28, 2024
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  14. Exponential fitting of truncated ATP data. Extracting KT and KD from … 

    …exponential parameters.
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    mashok2 committed May 28, 2024
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Commits on Nov 8, 2024

  1. Latest changes.

    @mashok2
    mashok2 committed Nov 8, 2024
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  2. Created a new file during jam session with Ana for staging final vers… 

    …ion of parameter estimation.
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    mashok2 committed Nov 8, 2024
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Commits on Dec 3, 2024

  1. Restructuring processing pipeline. Intermittent checkpoint.

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    mashok2 committed Dec 3, 2024
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Commits on Dec 4, 2024

  1. Processing pipeline worked out for one experiment. Coords code removed.

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    mashok2 committed Dec 4, 2024
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