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Added a few command links to cyclic peptide ribbon example.
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tomgoddard committed Jun 5, 2024
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Expand Up @@ -4,7 +4,7 @@ Chimerax does not close the ends of a ribbon of a cyclic peptide. Here is a tri

<img src="cyclic_ribbon.png" height=400>

In the example file [cyclic_peptide.pdb](cyclic_peptide.pdb) the closing peptide bond is not present. If your file has that closing bond you should delete it (selected it then command "~bond sel"). Here are commands [cyclic_ribbon.cxc](cyclic_ribbon.cxc) to extend chain A and show its ribbon.
In the example file [cyclic_peptide.pdb](cyclic_peptide.pdb) the closing peptide bond is not present. If your file has that closing bond you should delete it (selected it then command "~bond sel"). Here are commands [cyclic_ribbon.cxc](cyclic_ribbon.cxc) to extend chain A and show its ribbon. The [renumber](https://www.cgl.ucsf.edu/chimerax/docs/user/commands/renumber.html) and [combine](https://www.cgl.ucsf.edu/chimerax/docs/user/commands/combine.html) commands are used.

# Chain A is cyclic and chain B is not cyclic in this structure
open cyclic_peptide.pdb
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