First step toward building/testing AmberTools without screwing up dai…

…ly build

.github/workflows/test-amber.yml

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+name: Rebuild on change
+
+on:
+	push:
+		branch:  feature/ambertools
+
+jobs:
+  rebuild-changed-prereqs:
+    name: Rebuild changed prereqs
+    uses: ./.github/workflows/prereqs.yml
+  rebuild-changed-bundles:
+    needs: rebuild-changed-prereqs
+    name: Rebuild changed bundles
+    uses: ./.github/workflows/bundle-changes.yml
+  rebuild-changed-apps:
+    needs: rebuild-changed-prereqs
+    name: Rebuild changed apps
+    uses: ./.github/workflows/srcapps.yml
+  build-and-test-ubuntu:
+    needs:
+      [rebuild-changed-prereqs, rebuild-changed-bundles, rebuild-changed-apps]
+    name: Build ChimeraX
+    strategy:
+      matrix:
+        os: [ubuntu-20.04, ubuntu-22.04]
+    env:
+      PYOPENGL_PLATFORM: egl
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v4
+      - run: sudo apt-get update && sudo apt-get upgrade -y && ${PWD}/utils/set_up_ubuntu.sh
+      - run: MAKEOPTS="-j$(nproc)" make -j$(nproc) build-minimal
+      - name: Run the legacy test suite
+        run: make test
+      - name: Install Pytest
+        run: ./ChimeraX.app/bin/python3.11 -I -m pip install pytest pytest-cov
+      - name: Set up the repo for coverage reporting
+        run: make prepare-coverage
+      - name: Check whether ChimeraX.exe and python -m chimerax.core are equivalent
+        run: USE_COVERAGE=1 make pytest-both-exes
+      - name: Run wheel tests
+        run: USE_COVERAGE=1 make pytest-wheel
+      - name: Run distribution tests
+        run: USE_COVERAGE=1 make pytest-app
+      - name: Report coverage
+        run: make report-coverage
+  build-and-test-rocky8-docker:
+    needs:
+      [rebuild-changed-prereqs, rebuild-changed-bundles, rebuild-changed-apps]
+    runs-on: ubuntu-20.04
+    container:
+      image: rockylinux:8
+    env:
+      SHELL: /bin/bash
+      PATH: /usr/bin:/usr/sbin:/bin:/sbin
+    steps:
+      - run: export GIT_DISCOVERY_ACROSS_FILESYSTEM=1
+      - run: dnf update -y
+      - run: dnf install -y git-all
+      - uses: actions/checkout@v4
+      # buildinfo.py breaks without this
+      - run: chown -R $(id -u):$(id -g) $PWD
+      - run: ${PWD}/utils/set_up_centos.sh
+      - run: source /opt/rh/gcc-toolset-10/enable && MAKEOPTS="-j$(nproc)" make -j$(nproc) -f Makefile.centos build-minimal
+      - name: Run the legacy test suite
+        run: make test
+      - name: Install Pytest
+        run: ./ChimeraX.app/bin/python3.11 -I -m pip install pytest pytest-cov
+      - name: Set up the repo for coverage reporting
+        run: make prepare-coverage
+      - name: Check whether ChimeraX.exe and python -m chimerax.core are equivalent
+        run: USE_COVERAGE=1 make pytest-both-exes
+      - name: Run wheel tests
+        run: USE_COVERAGE=1 make pytest-wheel
+      - name: Run distribution tests
+        run: USE_COVERAGE=1 make pytest-app
+      - name: Report coverage
+        run: make report-coverage
+  build-and-test-macos:
+    needs:
+      [rebuild-changed-prereqs, rebuild-changed-bundles, rebuild-changed-apps]
+    runs-on: macos-latest
+    steps:
+      - name: Set up Homebrew
+        id: set-up-homebrew
+        uses: Homebrew/actions/setup-homebrew@master
+      - uses: actions/checkout@v4
+      - run: ${PWD}/utils/set_up_macos.sh
+      - run: MAKEOPTS="-j$(sysctl -n hw.logicalcpu)" make -j$(sysctl -n hw.logicalcpu) build-minimal
+      - name: Run the legacy test suite
+        run: make test
+      - name: Install Pytest
+        run: ./ChimeraX.app/Contents/bin/python3.11 -I -m pip install pytest pytest-cov
+      - name: Set up the repo for coverage reporting
+        run: make prepare-coverage
+      - name: Check whether ChimeraX.exe and python -m chimerax.core are equivalent
+        run: USE_COVERAGE=1 make pytest-both-exes
+      - name: Run wheel tests
+        run: USE_COVERAGE=1 make pytest-wheel
+      - name: Run distribution tests
+        run: USE_COVERAGE=1 make pytest-app
+      - name: Report coverage
+        run: make report-coverage
+  build-and-test-windows:
+    needs:
+      [rebuild-changed-prereqs, rebuild-changed-bundles, rebuild-changed-apps]
+    runs-on: windows-latest
+    defaults:
+      run:
+        shell: msys2 {0}
+    steps:
+      - uses: actions/checkout@v4
+      - uses: msys2/setup-msys2@v2
+        with:
+          msystem: MINGW64
+          update: true
+          install: git mingw-w64-x86_64-imagemagick mingw-w64-x86_64-binutils mingw-w64-x86_64-gcc mingw-w64-x86_64-gcc-objc mingw-w64-x86_64-gcc-fortran rsync patch unzip openssh make mingw-w64-x86_64-autotools
+      - run: AUTOMATIC_DISCOVERY=1 . ./vsvars.sh && MAKEOPTS="-j$(nproc)" make -j$(nproc) build-minimal
+      - name: Run the legacy test suite
+        run: AUTOMATIC_DISCOVERY=1 . ./vsvars.sh && make test
+      - name: Install Pytest
+        run: ./ChimeraX.app/bin/python.exe -I -m pip install pytest pytest-cov
+      - name: Set up the repo for coverage reporting
+        run: make prepare-coverage
+      - name: Check whether ChimeraX.exe and python -m chimerax.core are equivalent
+        run: USE_COVERAGE=1 make pytest-both-exes
+      - name: Run wheel tests
+        run: USE_COVERAGE=1 make pytest-wheel
+      - name: Run distribution tests
+        run: USE_COVERAGE=1 make pytest-app
+      - name: Report coverage
+        run: make report-coverage