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Allow AL2CO to work on larger alignments -- it's slow though #1002

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Allow AL2CO to work on larger alignments -- it's slow though

Allow AL2CO to work on larger alignments -- it's slow though #1002

Run time

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Job Run time
build-and-test-rocky8-docker
13m 13s
build-and-test-macos
9m 43s
build-and-test-windows
11m 10s
34m 6s