Merge branch 'development' into 00_Sort_BI_Extracts

.github/actions/spelling/expect.txt

@@ -5,6 +5,7 @@ ADPE
 adtf
 arrivalmode
 arth
+atlassian
 attendcat
 aut
 bedday
@@ -16,8 +17,10 @@ callr
 Canx
 carehome
 careinspectorate
+categorises
 cattend
 CCYY
+cdn
 cennum
 chp
 chpstart
@@ -27,6 +30,7 @@ cls
 cmh
 CNWs
 Comhairle
+codecov
 commhosp
 congen
 costincdnas
@@ -35,6 +39,7 @@ costsfy
 covr
 cph
 createslf
+customise
 dataframe
 datamart
 datazone
@@ -47,7 +52,9 @@ dbconnect
 dbplyr
 deathdiag
 demog
+devhints
 dfc
+Diagramme
 disch
 dischloc
 dischto
@@ -94,9 +101,11 @@ homev
 hscdiip
 hscp
 hscpnames
+htmlwidgets
 IDPC
 infyyear
 ipdc
+issuenumber
 itle
 iwalk
 jaccard
@@ -110,12 +119,14 @@ keytimex
 kis
 lazydt
 lgl
+lintr
 los
 ltc
 ltcs
 lubridate
 magrittr
 Matern
+markdownguide
 Mcbride
 mcmahon
 MMMYY
@@ -145,6 +156,7 @@ PCEC
 phs
 phsmethods
 phsopendata
+pkgdown
 placeinc
 plics
 PMS
@@ -156,6 +168,7 @@ praccode
 ptypes
 purrr
 quickstart
+rankdir
 Rbuildignore
 rcmdcheck
 rdd
@@ -167,6 +180,7 @@ readr
 readxl
 reasonwait
 recid
+reflectoring
 refsource
 renviron
 rlang
@@ -176,6 +190,7 @@ Rprofile
 Rscript
 rspm
 RStudio
+rstudio
 rstudioapi
 Rtype
 SDcols
@@ -187,6 +202,7 @@ setnames
 Siar
 sigfac
 simd
+SLF
 slf
 slfhelper
 smr

.github/workflows/R-CMD-check.yaml

@@ -24,7 +24,7 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/clean_cache.yaml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Cleanup
         run: |

.github/workflows/document.yaml

@@ -15,7 +15,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/lint-changed-files.yaml

@@ -12,7 +12,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
 

.github/workflows/pkgdown.yaml

@@ -26,7 +26,7 @@ jobs:
 
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Checkout Pull Request
         if: contains(env.isPR, 'true')

.github/workflows/style.yaml

@@ -15,7 +15,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/test-coverage.yaml

@@ -16,7 +16,7 @@ jobs:
 
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Setup R
         uses: r-lib/actions/setup-r@v2

NAMESPACE

@@ -1,6 +1,9 @@
 # Generated by roxygen2: do not edit by hand
 
 export("%>%")
+export(add_homelessness_date_flags)
+export(add_homelessness_flag)
+export(add_hri_variables)
 export(add_nsu_cohort)
 export(check_year_format)
 export(clean_up_free_text)
@@ -14,6 +17,7 @@ export(convert_numeric_to_date)
 export(convert_sending_location_to_lca)
 export(convert_year_to_fyyear)
 export(create_episode_file)
+export(create_homelessness_lookup)
 export(create_individual_file)
 export(create_service_use_cohorts)
 export(end_fy)
@@ -30,6 +34,7 @@ export(get_demographic_cohorts_path)
 export(get_dev_dir)
 export(get_dn_costs_path)
 export(get_dn_raw_costs_path)
+export(get_existing_data_for_tests)
 export(get_file_path)
 export(get_gp_ooh_costs_path)
 export(get_gp_ooh_raw_costs_path)
@@ -51,6 +56,7 @@ export(get_practice_details_path)
 export(get_readcode_lookup_path)
 export(get_sc_at_episodes_path)
 export(get_sc_ch_episodes_path)
+export(get_sc_client_lookup_path)
 export(get_sc_demog_lookup_path)
 export(get_sc_hc_episodes_path)
 export(get_sc_sds_episodes_path)
@@ -61,9 +67,7 @@ export(get_slf_ch_name_lookup_path)
 export(get_slf_chi_deaths_path)
 export(get_slf_deaths_lookup_path)
 export(get_slf_dir)
-export(get_slf_episode_path)
 export(get_slf_gpprac_path)
-export(get_slf_individual_path)
 export(get_slf_postcode_path)
 export(get_source_extract_path)
 export(get_sparra_path)
@@ -133,8 +137,10 @@ export(process_tests_nrs_deaths)
 export(process_tests_outpatients)
 export(process_tests_prescribing)
 export(process_tests_sc_ch_episodes)
+export(process_tests_sc_client_lookup)
 export(process_tests_sc_demographics)
 export(process_tests_sds)
+export(produce_episode_file_tests)
 export(produce_source_extract_tests)
 export(produce_test_comparison)
 export(read_extract_acute)

NEWS.md

@@ -1,7 +1,9 @@
 # September 2023 Update - Unreleased
 * Update of 2017/18 onwards to include bug fixes within the files. 
-* New 2023/24 files. 
-* New NSU cohort for 2022/23 file. 
+* New 2023/24 files.
+  *No social care data available for new 2023/24 file.
+* New NSU cohort for 2022/23 file.
+* SPD and SIMD updated.
 * Re addition of:
   * HRIs in individual file.
   * Homelessness Flags.

R/00-update_refs.R

@@ -7,7 +7,7 @@
 #'
 #' @family initialisation
 latest_update <- function() {
-  "Jun_2023"
+  "Sep_2023"
 }
 
 #' Previous update
@@ -61,7 +61,7 @@ previous_update <- function(months_ago = 3L, override = NULL) {
 #'
 #' @family initialisation
 get_dd_period <- function() {
-  "Jul16_Mar23"
+  "Jul16_Jun23"
 }
 
 #' The latest financial year for Cost uplift setting
@@ -74,5 +74,5 @@ get_dd_period <- function() {
 #'
 #' @family initialisation
 latest_cost_year <- function() {
-  "2223"
+  "2324"
 }