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Documentation #88

Merged
merged 31 commits into from
Aug 19, 2024
Merged

Documentation #88

merged 31 commits into from
Aug 19, 2024

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lizihao-anu
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Moohan and others added 28 commits July 24, 2023 19:34
* Update to dev version

* Make testthat run in parallel

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

* Revert changes and deal with NA chi/anon_chi

* Update documentation

* Style package

* Update tests so that they pass

* Style package

* fix tests

* Render `README.md` after changes to the `.Rmd` version

* exclude from tests for now

---------

Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4 to 5.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v4...v5)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>
Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
- [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
- [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
- [Commits](stefanzweifel/git-auto-commit-action@v4...v5)

---
updated-dependencies:
- dependency-name: stefanzweifel/git-auto-commit-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>
Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.4.3 to 4.5.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.4.3...v4.5.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 5 to 6.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v5...v6)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v3...v4)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>
Updated to include reading in LTC 'catch all' variables
* force keytime format to hms

* Update documentation

* visible binding for global variables like ‘keytime1’

* minor changes

* fix keytime in column names

* import hms

---------

Co-authored-by: lizihao-anu <[email protected]>
Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.5.0...v4.6.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@lizihao-anu lizihao-anu requested a review from Jennit07 August 16, 2024 15:09
Jennit07
Jennit07 previously approved these changes Aug 19, 2024
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Looks good, I wonder if we should be merging this into production? The reason is due to the new vignettes. We want to make sure they are deployed and we can add the links to the readme document

@lizihao-anu lizihao-anu changed the base branch from development to production August 19, 2024 08:52
@lizihao-anu lizihao-anu dismissed Jennit07’s stale review August 19, 2024 08:52

The base branch was changed.

@lizihao-anu lizihao-anu changed the base branch from production to development August 19, 2024 09:10
@lizihao-anu lizihao-anu requested a review from Jennit07 August 19, 2024 09:46
@lizihao-anu lizihao-anu added this pull request to the merge queue Aug 19, 2024
Merged via the queue into development with commit 85ed82f Aug 19, 2024
7 checks passed
@lizihao-anu lizihao-anu deleted the documentation branch August 19, 2024 09:51
github-merge-queue bot added a commit that referenced this pull request Aug 19, 2024
* Update to dev version

* Make testthat run in parallel

* Fix build tests (#63)

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

---------

Co-authored-by: James McMahon <[email protected]>

* Bug/tidyselect not working (#85)

* Allow using tidyselect helpers with `col_select`

* Add some tests for tidyselect helpers

* Update documentation

* recid and partnership filter
allow for recid and partnership filter when they are not specified to select in columns

* Style package

* update tests

---------

Co-authored-by: Moohan <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>

* Documentation (#88)

* Update maintainer to Megan (#69)

* Update README.Rmd (#64)

Co-authored-by: Jennit07 <[email protected]>

* Bug - speed up `get_chi()` (#68)

* Update to dev version

* Make testthat run in parallel

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

* Revert changes and deal with NA chi/anon_chi

* Update documentation

* Style package

* Update tests so that they pass

* Style package

* fix tests

* Render `README.md` after changes to the `.Rmd` version

* exclude from tests for now

---------

Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>

* Render `README.md` after changes to the `.Rmd` version (#70)

Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump actions/checkout from 3 to 4 (#66)

Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump peter-evans/create-pull-request from 4 to 5 (#65)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4 to 5.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v4...v5)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#67)

Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
- [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
- [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
- [Commits](stefanzweifel/git-auto-commit-action@v4...v5)

---
updated-dependencies:
- dependency-name: stefanzweifel/git-auto-commit-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump JamesIves/github-pages-deploy-action from 4.4.3 to 4.5.0 (#71)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.4.3 to 4.5.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.4.3...v4.5.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/upload-artifact from 3 to 4 (#72)

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump peter-evans/create-pull-request from 5 to 6 (#74)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 5 to 6.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v5...v6)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/cache from 3 to 4 (#73)

Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v3...v4)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Update README.md (#75)

Updated to include reading in LTC 'catch all' variables

* change in episode file cost variable vector (#76)

Co-authored-by: marjom02 <[email protected]>

* force keytime format to hms (#77)

* force keytime format to hms

* Update documentation

* visible binding for global variables like ‘keytime1’

* minor changes

* fix keytime in column names

* import hms

---------

Co-authored-by: lizihao-anu <[email protected]>

* Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.6.0 (#79)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.5.0...v4.6.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add vignette for SLFhelper documentation

* Style package

* Hide messages

* remove conflict

* Style package

* Split up documentation into 3 vignettes

* add a comparison table to show the efficiency improvement

* Update - round memory size

* replace columns by col_select and add tidyselect

* Style package

* update ep_file_vars and indiv_file_vars

* add session memory recommendation

* Update R-CMD-check.yaml

* fix cmd build error

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <[email protected]>
Co-authored-by: marjom02 <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>
Co-authored-by: Jennifer Thom <[email protected]>

* Update documentation (#90)

Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump JamesIves/github-pages-deploy-action from 4.6.0 to 4.6.3 (#82)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.6.0 to 4.6.3.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.6.0...v4.6.3)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Increment version number to 0.10.2 (#81)

* Increment version number to 0.10.2

* update description

* Update R-CMD-check.yaml

* Update yaml

---------

Co-authored-by: Zihao Li <[email protected]>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: Moohan <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <[email protected]>
Co-authored-by: marjom02 <[email protected]>
Co-authored-by: Jennifer Thom <[email protected]>
Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
github-merge-queue bot added a commit that referenced this pull request Sep 9, 2024
* Update to dev version

* Make testthat run in parallel

* Fix build tests (#63)

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

---------

Co-authored-by: James McMahon <[email protected]>

* Bug/tidyselect not working (#85)

* Allow using tidyselect helpers with `col_select`

* Add some tests for tidyselect helpers

* Update documentation

* recid and partnership filter
allow for recid and partnership filter when they are not specified to select in columns

* Style package

* update tests

---------

Co-authored-by: Moohan <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>

* Documentation (#88)

* Update maintainer to Megan (#69)

* Update README.Rmd (#64)

Co-authored-by: Jennit07 <[email protected]>

* Bug - speed up `get_chi()` (#68)

* Update to dev version

* Make testthat run in parallel

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

* Revert changes and deal with NA chi/anon_chi

* Update documentation

* Style package

* Update tests so that they pass

* Style package

* fix tests

* Render `README.md` after changes to the `.Rmd` version

* exclude from tests for now

---------

Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>

* Render `README.md` after changes to the `.Rmd` version (#70)

Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump actions/checkout from 3 to 4 (#66)

Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump peter-evans/create-pull-request from 4 to 5 (#65)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4 to 5.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v4...v5)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#67)

Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
- [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
- [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
- [Commits](stefanzweifel/git-auto-commit-action@v4...v5)

---
updated-dependencies:
- dependency-name: stefanzweifel/git-auto-commit-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump JamesIves/github-pages-deploy-action from 4.4.3 to 4.5.0 (#71)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.4.3 to 4.5.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.4.3...v4.5.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/upload-artifact from 3 to 4 (#72)

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump peter-evans/create-pull-request from 5 to 6 (#74)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 5 to 6.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v5...v6)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/cache from 3 to 4 (#73)

Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v3...v4)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Update README.md (#75)

Updated to include reading in LTC 'catch all' variables

* change in episode file cost variable vector (#76)

Co-authored-by: marjom02 <[email protected]>

* force keytime format to hms (#77)

* force keytime format to hms

* Update documentation

* visible binding for global variables like ‘keytime1’

* minor changes

* fix keytime in column names

* import hms

---------

Co-authored-by: lizihao-anu <[email protected]>

* Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.6.0 (#79)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.5.0...v4.6.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add vignette for SLFhelper documentation

* Style package

* Hide messages

* remove conflict

* Style package

* Split up documentation into 3 vignettes

* add a comparison table to show the efficiency improvement

* Update - round memory size

* replace columns by col_select and add tidyselect

* Style package

* update ep_file_vars and indiv_file_vars

* add session memory recommendation

* Update R-CMD-check.yaml

* fix cmd build error

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <[email protected]>
Co-authored-by: marjom02 <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>
Co-authored-by: Jennifer Thom <[email protected]>

* Update documentation (#90)

Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Bump JamesIves/github-pages-deploy-action from 4.6.0 to 4.6.3 (#82)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.6.0 to 4.6.3.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.6.0...v4.6.3)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <[email protected]>

* Increment version number to 0.10.2 (#81)

* Increment version number to 0.10.2

* update description

* Update R-CMD-check.yaml

* Update yaml

---------

Co-authored-by: Zihao Li <[email protected]>

* Fix the tidyselect feature bug (#95)

* reconstruct read_slf to fix bug of selecting feature

* Update documentation

* remove TODO add a filter by recid as it has been done

* Style package

* update ep and individual file variables

---------

Co-authored-by: lizihao-anu <[email protected]>
Co-authored-by: Jennit07 <[email protected]>

* Increment version number to 0.10.4

* Update NEWS

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Moohan <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <[email protected]>
Co-authored-by: marjom02 <[email protected]>
Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
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