20241124.1 global branch merge.

Signed-off-by: Matteo Bernardini <[email protected]>
Ponce · Nov 24, 2024 · acb1e0d · acb1e0d
1 parent 87bac93
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diff --git a/README b/README
@@ -1,3 +1,19 @@
+SBo-git - slackbuilds repository for slackware-current
+- - -
+
+this is an unofficial fork of master branch from slackbuilds.org's
+git repository (http://slackbuilds.org/cgit/slackbuilds/).
+
+here I put my unofficial mods to their slackbuilds to run on
+slackware-current with sbopkg (http://www.sbopkg.org).
+
+Check https://github.com/Ponce/slackbuilds/wiki for additional informations.
+
+See https://github.com/Ponce/slackbuilds/wiki/configuring-the-current-repository-with-sbopkg
+for instructions on how to use this repository with sbopkg.
+
+original README from slackbuilds.org follows:
+---------------------------------------------
 
 See https://slackbuilds.org/howto/ for instructions on 
 how to use the contents of this directory.

diff --git a/academic/EMBASSY/EMBASSY.SlackBuild b/academic/EMBASSY/EMBASSY.SlackBuild
@@ -295,6 +295,9 @@ make install DESTDIR=$PKG
 
 # Build MSE
 cd $TMP/$PRGNAM-$VERSION/$MSE
+# Use sed to fix the ncurses issue in mse.c
+sed -i 's/Display->_maxx/COLS/' src/mse.c || exit 1
+sed -i 's/Display->_maxy/LINES/' src/mse.c || exit 1
 CFLAGS="$SLKCFLAGS $LIBDIRPATH" \
 CXXFLAGS="$SLKCFLAGS $LIBDIRPATH" \
 LDFLAGS="-L/usr/lib${LIBDIRSUFFIX}/EMBOSS" \

diff --git a/academic/WordNet/WordNet.SlackBuild b/academic/WordNet/WordNet.SlackBuild
@@ -104,7 +104,7 @@ CXXFLAGS="$SLKCFLAGS" \
   --datadir=/usr/share/wordnet \
   --build=$ARCH-slackware-linux
 
-make CFLAGS="$CFLAGS -DUSE_INTERP_RESULT"
+make CFLAGS="$CFLAGS -DUSE_INTERP_RESULT -std=c89"
 make install-strip DESTDIR=$PKG
 gzip -9 $PKG/usr/man/man*/*
 

diff --git a/academic/bedtools/bedtools.SlackBuild b/academic/bedtools/bedtools.SlackBuild
@@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd)
 
 PRGNAM=bedtools
 DIRNAM=bedtools2
-VERSION=${VERSION:-2.31.0}
+VERSION=${VERSION:-2.31.1}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 PKGTYPE=${PKGTYPE:-tgz}

diff --git a/academic/bedtools/bedtools.info b/academic/bedtools/bedtools.info
@@ -1,8 +1,8 @@
 PRGNAM="bedtools"
-VERSION="2.31.0"
+VERSION="2.31.1"
 HOMEPAGE="http://bedtools.readthedocs.org/"
-DOWNLOAD="https://github.com/arq5x/bedtools2/releases/download/v2.31.0/bedtools-2.31.0.tar.gz"
-MD5SUM="d840193968e345947b076eaa322a9420"
+DOWNLOAD="https://github.com/arq5x/bedtools2/releases/download/v2.31.1/bedtools-2.31.1.tar.gz"
+MD5SUM="d1eb463c07c0753a4ee3af614b2ae387"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES=""

diff --git a/academic/cutadapt/cutadapt.SlackBuild b/academic/cutadapt/cutadapt.SlackBuild
@@ -25,7 +25,7 @@
 cd $(dirname $0) ; CWD=$(pwd)
 
 PRGNAM=cutadapt
-VERSION=${VERSION:-1.14}
+VERSION=${VERSION:-4.9}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 PKGTYPE=${PKGTYPE:-tgz}
@@ -85,7 +85,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a CHANGES.rst CITATION LICENSE README.rst $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a CHANGES.rst LICENSE README.rst $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 
 mkdir -p $PKG/install

diff --git a/academic/cutadapt/cutadapt.info b/academic/cutadapt/cutadapt.info
@@ -1,8 +1,8 @@
 PRGNAM="cutadapt"
-VERSION="1.14"
+VERSION="4.9"
 HOMEPAGE="https://pypi.python.org/pypi/cutadapt/"
-DOWNLOAD="https://pypi.python.org/packages/16/e3/06b45eea35359833e7c6fac824b604f1551c2fc7ba0f2bd318d8dd883eb9/cutadapt-1.14.tar.gz"
-MD5SUM="57403c3794aa940699df3032a5e9b208"
+DOWNLOAD="https://files.pythonhosted.org/packages/cb/15/85799e7fa1dfb86b8f79f8f98902b28003a054c46447a0580f21e535dbf3/cutadapt-4.9.tar.gz"
+MD5SUM="8642bd2807ab04cb6207e6c72f595a6d"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="xopen"

diff --git a/academic/labplot2/README b/academic/labplot2/README
diff --git a/academic/labplot2/doinst.sh b/academic/labplot2/doinst.sh
diff --git a/academic/labplot2/labplot2.SlackBuild b/academic/labplot2/labplot2.SlackBuild
diff --git a/academic/labplot2/labplot2.info b/academic/labplot2/labplot2.info
diff --git a/academic/labplot2/slack-desc b/academic/labplot2/slack-desc
diff --git a/academic/staden/staden.SlackBuild b/academic/staden/staden.SlackBuild
@@ -81,6 +81,8 @@ find -L . \
  \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
 
+sed -i '11i #include <xalloc.h>' stops/stops.c
+
 # Make sure libraries path is correct.
 sed -i "s:$STADENROOT/lib:$STADENROOT/lib${LIBDIRSUFFIX}:g" \
   global.mk staden.profile

diff --git a/academic/stellarium/stellarium.SlackBuild b/academic/stellarium/stellarium.SlackBuild
@@ -122,6 +122,7 @@ cd build
     -DPYTHON_EXECUTABLE=/usr/bin/python3 \
     -DCMAKE_INSTALL_LIBDIR=/usr/lib${LIBDIRSUFFIX} \
     -DCMAKE_INSTALL_MANDIR=/usr/man \
+    -DPREFER_SYSTEM_INDILIB=NO \
     -DCMAKE_BUILD_TYPE=Release ..
   make
   make install DESTDIR=$PKG

diff --git a/academic/stellarsolver/README b/academic/stellarsolver/README
diff --git a/academic/stellarsolver/doinst.sh b/academic/stellarsolver/doinst.sh
diff --git a/academic/stellarsolver/slack-desc b/academic/stellarsolver/slack-desc