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Fixed multiple bin binds failure in ASSEMBLATHON_STATS #121

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Jul 31, 2024
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5 changes: 3 additions & 2 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -24,8 +24,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
5. Now `LTRRETRIEVER_LTRRETRIEVER` does not crash when the input assembly does not contain any LTRs [#92](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/92)
6. Now `LTRRETRIEVER_LTRRETRIEVER` does not crash when the input assembly is not writable [#98](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/98)
7. Now soft masked regions are unmasked before computing LAI [#117](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/117)
8. Changed `NextFlow` to `Nextflow`
9. Updated citation to Bioinformatics
8. Fixed a bug in `ASSEMBLATHON_STATS` which caused it to fail on MMC executor due to multiple binds of the `bin` directory
9. Changed `NextFlow` to `Nextflow`
10. Updated citation to Bioinformatics

### `Dependencies`

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2 changes: 1 addition & 1 deletion modules/local/assemblathon_stats.nf
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ process ASSEMBLATHON_STATS {
| xargs
)
falite_path="\$(find \$paths_to_check -name FAlite_a93cba2.pm)"
falite_path="\$(find \$paths_to_check -name FAlite_a93cba2.pm | head -n 1)"
ln -s "\$falite_path" FAlite_a93cba2.pm
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